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The genomic landscape of CYP2D6 variation in the Indian population.

Ambily SivadasSurabhi RathoreS SahanaBani JollyRahul C BhoyarAbhinav JainVinod ScariaMohamed ImranVigneshwar SenthilvelMohit Kumar DivakarAnushree MishraSridhar SivasubbuVinod Scaria
Published in: Pharmacogenomics (2024)
Aim: The CYP2D6 gene is highly polymorphic, causing large interindividual variability in the metabolism of several clinically important drugs. Materials & methods: The authors investigated the diversity and distribution of CYP2D6 alleles in Indians using whole genome sequences (N = 1518). Functional consequences were assessed using pathogenicity scores and molecular dynamics simulations. Results: The analysis revealed population-specific CYP2D6 alleles ( *86 , *7 , *111 , *112 , *113 , *99 ) and remarkable differences in variant and phenotype frequencies with global populations. The authors observed that one in three Indians could benefit from a dose alteration for psychiatric drugs with accurate CYP2D6 phenotyping. Molecular dynamics simulations revealed large conformational fluctuations, confirming the predicted reduced function of *86 and *113 alleles. Conclusion: The findings emphasize the utility of comprehensive CYP2D6 profiling for aiding precision public health.
Keyphrases
  • molecular dynamics simulations
  • public health
  • molecular docking
  • single cell
  • high throughput
  • copy number
  • gene expression
  • genome wide
  • dna methylation
  • drug induced
  • mass spectrometry