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Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species.

Peter J MaughanRebekah LeeRachel WalsteadRobert J VickerstaffMelissa C FogartyCory R BrouwerRobert R ReidJeremy J JayWubishet A BekeleEric W JacksonNicholas A TinkerTim LangdonJessica A SchlueterEric N Jellen
Published in: BMC biology (2019)
The genomes we report here are the first chromosome-scale assemblies for the tribe Poeae, subtribe Aveninae. Our analyses provide important insight into the evolution and complexity of common hexaploid oat, including subgenome origin, homoeologous relationships, and major intra- and intergenomic rearrangements. They also provide the annotation framework needed to accelerate gene discovery and plant breeding.
Keyphrases
  • copy number
  • genome wide
  • small molecule
  • high throughput
  • gene expression
  • rna seq
  • genetic diversity
  • single cell
  • transcription factor