HiCcompare: an R-package for joint normalization and comparison of HI-C datasets.

John C StansfieldKellen G CresswellVladimir I VladimirovMikhail G Dozmorov

Published in: BMC bioinformatics (2018)

HiCcompare is able to remove between-dataset bias present in Hi-C matrices. It also provides a user-friendly tool to allow the scientific community to perform direct comparisons between the growing number of pre-processed Hi-C datasets available at online repositories. HiCcompare is freely available as a Bioconductor R package https://bioconductor.org/packages/HiCcompare/ .

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