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ResidueFinder: extracting individual residue mentions from protein literature.

Ton E BeckerEric Jakobsson
Published in: Journal of biomedical semantics (2021)
ResidueFinder is a simple, effective, and efficient program for finding individual residue mentions in primary literature starting with text files, implemented in Python, and available in SourceForge.net. The most computationally efficient versions of ResidueFinder could enable creation and maintenance of a database of residue mentions encompassing all articles in PubMed.
Keyphrases
  • systematic review
  • amino acid
  • smoking cessation
  • protein protein
  • small molecule
  • adverse drug