Login / Signup

Systematic prediction of degrons and E3 ubiquitin ligase binding via deep learning.

Chao HouYuxuan LiMengyao WangHong WuTingting Li
Published in: BMC biology (2022)
Degpred provides an efficient tool to proteome-wide prediction of degrons and binding E3s singly from protein sequences. Degpred successfully captures typical degron-related sequence properties and predicts degrons beyond those from previously used motif-based methods, thus greatly expanding the degron landscape, which should advance the understanding of protein degradation, and allow exploration of uncharacterized alterations of proteins in diseases. To make it easier for readers to access collected and predicted datasets, we integrated these data into the website http://degron.phasep.pro/ .
Keyphrases
  • deep learning
  • binding protein
  • amino acid
  • protein protein
  • machine learning
  • single cell
  • convolutional neural network
  • rna seq
  • artificial intelligence
  • small molecule
  • anti inflammatory
  • transcription factor