Ultrafast dynamics of heme distortion in the O 2 -sensor of a thermophilic anaerobe bacterium.
Olga N PetrovaByung-Kuk YooIsabelle LamarreJulien SellesPierre NiocheMichel NegreriePublished in: Communications chemistry (2021)
Heme-Nitric oxide and Oxygen binding protein domains (H-NOX) are found in signaling pathways of both prokaryotes and eukaryotes and share sequence homology with soluble guanylate cyclase, the mammalian NO receptor. In bacteria, H-NOX is associated with kinase or methyl accepting chemotaxis domains. In the O 2 -sensor of the strict anaerobe Caldanaerobacter tengcongensis (Ct H-NOX) the heme appears highly distorted after O 2 binding, but the role of heme distortion in allosteric transitions was not yet evidenced. Here, we measure the dynamics of the heme distortion triggered by the dissociation of diatomics from Ct H-NOX using transient electronic absorption spectroscopy in the picosecond to millisecond time range. We obtained a spectroscopic signature of the heme flattening upon O 2 dissociation. The heme distortion is immediately (<1 ps) released after O 2 dissociation to produce a relaxed state. This heme conformational change occurs with different proportions depending on diatomics as follows: CO < NO < O 2 . Our time-resolved data demonstrate that the primary structural event of allostery is the heme distortion in the Ct H-NOX sensor, contrastingly with hemoglobin and the human NO receptor, in which the primary structural events are respectively the motion of the proximal histidine and the rupture of the iron-histidine bond.
Keyphrases
- nitric oxide
- binding protein
- computed tomography
- endothelial cells
- signaling pathway
- image quality
- contrast enhanced
- dual energy
- single molecule
- oxidative stress
- cell proliferation
- big data
- positron emission tomography
- molecular dynamics simulations
- electronic health record
- deep learning
- data analysis
- nitric oxide synthase
- solid state