Benchmark Data Set of Crystalline Organic Semiconductors.
Andriy ZhugayevychWenbo SunTammo van der HeideCarlos R Lien-MedranoThomas FrauenheimSergei TretiakPublished in: Journal of chemical theory and computation (2023)
This work reports a Benchmark Data set of Crystalline Organic Semiconductors to test calculations of the structural and electronic properties of these materials in the solid state. The data set contains 67 crystals consisting of mostly rigid molecules with a single dominant conformer, covering the majority of known structural types. The experimental crystal structure is available for the entire data set, whereas zero-temperature unit cell volume can be reliably estimated for a subset of 28 crystals. Using this subset, we benchmark r 2 SCAN-D3 and PBE-D3 density functionals. Then, for the entire data set, we benchmark approximate density functional theory (DFT) methods, including GFN1-xTB and DFTB3(3ob-3-1), with various dispersion corrections against r 2 SCAN-D3. Our results show that r 2 SCAN-D3 geometries are accurate within a few percent, which is comparable to the statistical uncertainty of experimental data at a fixed temperature, but the unit cell volume is systematically underestimated by 2% on average. The several times faster PBE-D3 provides an unbiased estimate of the volume for all systems except for molecules with highly polar bonds, for which the volume is substantially overestimated in correlation with the underestimation of atomic charges. Considered approximate DFT methods are orders of magnitude faster and provide qualitatively correct but overcompressed crystal structures unless the dispersion corrections are fitted by unit cell volume.
Keyphrases
- density functional theory
- electronic health record
- big data
- computed tomography
- crystal structure
- single cell
- molecular dynamics
- room temperature
- stem cells
- magnetic resonance imaging
- machine learning
- artificial intelligence
- molecular docking
- data analysis
- mass spectrometry
- molecular dynamics simulations
- drug induced
- adverse drug
- water soluble