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RNA-Seq profiling in peripheral blood mononuclear cells of amyotrophic lateral sclerosis patients and controls.

Susanna ZuccaStella GagliardiCecilia PandiniLuca DiamantiMatteo BordoniDaisy SprovieroMaddalena ArigoniMartina OliveroOrietta PansarasaMauro CeroniRaffaele CalogeroCristina Cereda
Published in: Scientific data (2019)
Coding and long non-coding RNA (lncRNA) metabolism is now revealing its crucial role in Amyotrophic Lateral Sclerosis (ALS) pathogenesis. In this work, we present a dataset obtained via Illumina RNA-seq analysis on Peripheral Blood Mononuclear Cells (PBMCs) from sporadic and mutated ALS patients (mutations in FUS, TARDBP, SOD1 and VCP genes) and healthy controls. This dataset allows the whole-transcriptome characterization of PBMCs content, both in terms of coding and non-coding RNAs, in order to compare the disease state to the healthy controls, both for sporadic patients and for mutated patients. Our dataset is a starting point for the omni-comprehensive analysis of coding and lncRNAs, from an easy to withdraw, manage and store tissue that shows to be a suitable model for RNA profiling in ALS.
Keyphrases
  • rna seq
  • amyotrophic lateral sclerosis
  • end stage renal disease
  • long non coding rna
  • single cell
  • chronic kidney disease
  • ejection fraction
  • newly diagnosed
  • late onset
  • dna methylation
  • long noncoding rna