Ascorbic Acid Reprograms Epigenome and Epitranscriptome by Reducing Fe(III) in the Catalytic Cycle of Dioxygenases.
Weizhi HeXiaotong YinChu XuXiangyue LiuYue HuangCaiguang YangYanhui XuLulu HuPublished in: ACS chemical biology (2023)
Ascorbic acid (ASC) has been reported to stimulate DNA iterative oxidase ten-eleven translocation (TET) enzymes, Jumonji C-domain-containing histone demethylases, and potentially RNA m 6 A demethylases FTO and ALKBH5 as a cofactor. Although ascorbic acid has been widely investigated in reprogramming DNA and histone methylation status in vitro , in cultured cells and mouse models, its specific role in the catalytic cycle of dioxygenases remains enigmatic. Here, we systematically investigated the stimulation of ASC toward TET2, ALKBH3, histone demethylases, and FTO. We find that ASC reprograms epitranscriptome by erasing the hypermethylated m 6 A sites in mRNA. Biochemistry and electron spin resonance assays demonstrate that ASC enters the active pocket of dioxygenases and reduces Fe(III), either incorporated upon protein synthesis or generated upon rebounding the hydroxyl radical during oxidation, into Fe(II). Finally, we propose a remedied model for the catalytic cycle of dioxygenases by adding in the essential cofactor, ASC, which refreshes and regenerates inactive dioxygenase through recycling Fe(III) into Fe(II) in a dynamic "hit-and-run" manner.
Keyphrases
- dna methylation
- nlrp inflammasome
- metal organic framework
- single molecule
- aqueous solution
- visible light
- cell free
- circulating tumor
- mouse model
- induced apoptosis
- atomic force microscopy
- nucleic acid
- cell cycle arrest
- magnetic resonance
- high throughput
- energy transfer
- endoplasmic reticulum stress
- image quality
- quantum dots
- single cell