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LettuceDB: an integrated multi-omics database for cultivated lettuce.

Wenhui ZhouTao YangLiucui ZengJing ChenYayu WangXing GuoLijin YouYiqun LiuWensi DuFan YangCong HuaJia CaiTheo van HintumHuan LiuYing GuXiaofeng WeiTong Wei
Published in: Database : the journal of biological databases and curation (2024)
Crop genomics has advanced rapidly during the past decade, which generated a great abundance of omics data from multi-omics studies. How to utilize the accumulating data becomes a critical and urgent demand in crop science. As an attempt to integrate multi-omics data, we developed a database, LettuceDB (https://db.cngb.org/lettuce/), aiming to assemble multidimensional data for cultivated and wild lettuce germplasm. The database includes genome, variome, phenome, microbiome and spatial transcriptome. By integrating user-friendly bioinformatics tools, LettuceDB will serve as a one-stop platform for lettuce research and breeding in the future. Database URL: https://db.cngb.org/lettuce/.
Keyphrases
  • single cell
  • electronic health record
  • big data
  • adverse drug
  • rna seq
  • climate change
  • public health
  • gene expression
  • genome wide
  • emergency department
  • dna methylation
  • data analysis
  • current status
  • case control