Login / Signup

Structural basis of the Meinwald rearrangement catalysed by styrene oxide isomerase.

Basavraj KhanppnavarJoel P S ChooPeter Leon HagedoornGrigory SmolentsevSasa StefanicSelvapravin KumaranDirk TischlerFritz K WinklerVolodymyr M KorkhovZhi LiRichard A KammererXiaodan Li
Published in: Nature chemistry (2024)
Membrane-bound styrene oxide isomerase (SOI) catalyses the Meinwald rearrangement-a Lewis-acid-catalysed isomerization of an epoxide to a carbonyl compound-and has been used in single and cascade reactions. However, the structural information that explains its reaction mechanism has remained elusive. Here we determine cryo-electron microscopy (cryo-EM) structures of SOI bound to a single-domain antibody with and without the competitive inhibitor benzylamine, and elucidate the catalytic mechanism using electron paramagnetic resonance spectroscopy, functional assays, biophysical methods and docking experiments. We find ferric haem b bound at the subunit interface of the trimeric enzyme through H58, where Fe(III) acts as the Lewis acid by binding to the epoxide oxygen. Y103 and N64 and a hydrophobic pocket binding the oxygen of the epoxide and the aryl group, respectively, position substrates in a manner that explains the high regio-selectivity and stereo-specificity of SOI. Our findings can support extending the range of epoxide substrates and be used to potentially repurpose SOI for the catalysis of new-to-nature Fe-based chemical reactions.
Keyphrases
  • electron microscopy
  • structural basis
  • high resolution
  • high throughput
  • healthcare
  • visible light
  • molecular dynamics simulations
  • single molecule
  • protein protein
  • small molecule
  • health information
  • dna binding