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De novo transcriptome assembly analysis of weed Apera spica-venti from seven tissues and growth stages.

Marielle BabineauKhalid MahmoodSolvejg K MathiassenPer KudskMichael Kristensen
Published in: BMC genomics (2017)
De novo transcriptome assembly enabled the generation of the first reference transcriptome of A. spica-venti. This can serve as stepping stone for understanding the metabolic herbicide resistance as well as the general biology of this problematic weed. Furthermore, this large-scale sequence data is a valuable scientific resource for comparative transcriptome analysis for Poaceae grasses.
Keyphrases
  • rna seq
  • gene expression
  • single cell
  • genome wide
  • machine learning
  • data analysis