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Non-covalent interactions reveal the protein chain δ conformation in a flexible single-residue model.

Zeynab ImaniVenkateswara Rao MundlapatiValérie BrennerEric GloaguenKatia Le Barbu-DebusAnne Zehnacker-RentienSylvie RobinDavid J AitkenMichel Mons
Published in: Chemical communications (Cambridge, England) (2023)
The δ conformation is a local secondary structure in proteins that implicates a π amide N-H⋯N interaction between a backbone N atom and the NH of the following residue. Small-molecule models thereof have been limited so far to rigid proline-type compounds. We show here that in derivatives of a cyclic amino acid with a sulphur atom in the γ-position, specific side-chain/backbone N-H⋯S interactions stabilize the δ conformation sufficiently to allow it to compete with classical C5 and C7 H-bonded conformers.
Keyphrases
  • amino acid
  • small molecule
  • molecular dynamics simulations
  • crystal structure
  • protein protein
  • molecular dynamics
  • genome wide
  • electron transfer
  • room temperature
  • ionic liquid