Distinguishing Healthy and Carcinoma Cell Cultures Using Fluorescence Spectra Decomposition with a Genetic-Algorithm-Based Code.
Marie PospíšilováHana KalábováGabriela KuncováPublished in: Biosensors (2023)
In this paper, we analysed the steady state fluorescence spectra of cell suspensions containing healthy and carcinoma fibroblast mouse cells, using a genetic-algorithm-spectra-decomposition software (GASpeD). In contrast to other deconvolution algorithms, such as polynomial or linear unmixing software, GASpeD takes into account light scatter. In cell suspensions, light scatter plays an important role as it depends on the number of cells, their size, shape, and coagulation. The measured fluorescence spectra were normalized, smoothed and deconvoluted into four peaks and background. The wavelengths of intensities' maxima of lipopigments (LR), FAD, and free/bound NAD(P)H (AF/AB) of the deconvoluted spectra matched published data. In deconvoluted spectra at pH = 7, the fluorescence intensities of the AF/AB ratio in healthy cells was always higher in comparison to carcinoma cells. In addition, the AF/AB ratio in healthy and carcinoma cells were influenced differently by changes in pH. In mixtures of healthy and carcinoma cells, AF/AB decreases when more than 13% of carcinoma cells are present. Expensive instrumentation is not required, and the software is user friendly. Due to these attributes, we hope that this study will be a first step in the development of new cancer biosensors and treatments with the use of optical fibers.
Keyphrases
- induced apoptosis
- density functional theory
- atrial fibrillation
- cell cycle arrest
- machine learning
- single cell
- single molecule
- deep learning
- cell therapy
- energy transfer
- endoplasmic reticulum stress
- genome wide
- cell death
- signaling pathway
- squamous cell carcinoma
- magnetic resonance imaging
- systematic review
- bone marrow
- data analysis
- papillary thyroid
- high resolution
- big data
- young adults
- dna methylation
- electronic health record
- cell proliferation
- mesenchymal stem cells
- squamous cell
- wound healing