Texture identification in liquid crystal-protein droplets using evaporative drying, generalized additive modeling, and K-means Clustering.
Anusuya PalAmalesh GopePublished in: The European physical journal. E, Soft matter (2024)
Sessile drying droplets manifest distinct morphological patterns, encompassing diverse systems, viz., DNA, proteins, blood, and protein-liquid crystal (LC) complexes. This study employs an integrated methodology that combines drying droplet, image texture analysis (features from First Order Statistics, Gray Level Co-occurrence Matrix, Gray Level Run Length Matrix, Gray Level Size Zone Matrix, and Gray Level Dependence Matrix), and statistical data analysis (Generalized Additive Modeling and K-means clustering). It provides a comprehensive qualitative and quantitative exploration by examining LC-protein droplets at varying initial phosphate buffered concentrations (0x, 0.25x, 0.5x, 0.75x, and 1x) during the drying process under optical microscopy with crossed polarizing configuration. Notably, it unveils distinct LC-protein textures across three drying stages: initial, middle, and final. The Generalized Additive Modeling (GAM) reveals that all the features significantly contribute to differentiating LC-protein droplets. Integrating the K-means clustering method with GAM analysis elucidates how textures evolve through the three drying stages compared to the entire drying process. Notably, the final drying stage stands out with well-defined, non-overlapping clusters, supporting the visual observations of unique LC textures. Furthermore, this paper contributes valuable insights, showcasing the efficacy of drying droplets as a rapid and straightforward tool for characterizing and classifying dynamic LC textures.
Keyphrases
- simultaneous determination
- data analysis
- protein protein
- single cell
- mass spectrometry
- high resolution
- amino acid
- binding protein
- liquid chromatography
- magnetic resonance
- high throughput
- systematic review
- computed tomography
- magnetic resonance imaging
- single molecule
- small molecule
- solid phase extraction
- contrast enhanced
- tandem mass spectrometry
- high speed
- high resolution mass spectrometry
- nucleic acid