The advanced treatment of hydrogen bonding in quantum crystallography.
Lorraine A MalaspinaAlessandro GenoniDylan JayatilakaMichael J TurnerKunihisa SugimotoEiji NishiboriSimon GrabowskyPublished in: Journal of applied crystallography (2021)
Although hydrogen bonding is one of the most important motifs in chemistry and biology, H-atom parameters are especially problematic to refine against X-ray diffraction data. New developments in quantum crystallography offer a remedy. This article reports how hydrogen bonds are treated in three different quantum-crystallographic methods: Hirshfeld atom refinement (HAR), HAR coupled to extremely localized molecular orbitals and X-ray wavefunction refinement. Three different compound classes that form strong intra- or intermolecular hydrogen bonds are used as test cases: hydrogen maleates, the tripeptide l-alanyl-glycyl-l-alanine co-crystallized with water, and xylitol. The differences in the quantum-mechanical electron densities underlying all the used methods are analysed, as well as how these differences impact on the refinement results.
Keyphrases
- molecular dynamics
- density functional theory
- energy transfer
- electron microscopy
- high resolution
- crystal structure
- dual energy
- monte carlo
- magnetic resonance imaging
- electronic health record
- magnetic resonance
- electron transfer
- big data
- computed tomography
- artificial intelligence
- drug discovery
- adverse drug
- transition metal