link-ancestors: fast simulation of local ancestry with tree sequence software.

Georgia TsambosJerome KelleherPeter RalphStephen LeslieDamjan Vukcevic

Published in: Bioinformatics advances (2023)

A C-based implementation of the link-ancestors algorithm is in tskit (https://tskit.dev/tskit/docs/stable/). We also provide a user-friendly wrapper for link-ancestors in tspop, a Python-based utility package.

Keyphrases

primary care
healthcare
machine learning
quality improvement
data analysis
virtual reality