Slow darkening of pinto bean seed coat is associated with significant metabolite and transcript differences related to proanthocyanidin biosynthesis.

Kishor DuwadiRyan S AustinHemanta R MainaliKirstin BettFrédéric MarsolaisSangeeta Dhaubhadel

Published in: BMC genomics (2018)

RNAseq analysis and metabolite data of seed coat tissue from CDC Pintium and 1533-15 revealed that the whole proanthocyanidin biosynthetic pathway was downregulated in 1533-15. Additionally, genes that encode for putative transporter proteins were also downregulated in 1533-15 suggesting both synthesis and accumulation of proanthocyanidin is reduced in SD pintos.

Keyphrases

electronic health record
genome wide
single cell
rna seq
cell cycle
big data
data analysis
dna methylation
deep learning