Germline mutation landscape of DNA damage repair genes in African Americans with prostate cancer highlights potentially targetable RAD genes.
Indu KohaarXijun ZhangShyh-Han TanDarryl NousomeKevin BabcockLakshmi RavindranathGauthaman SukumarElisa Mcgrath-MartinezJohn RosenbergerCamille AlbaAmina AliDenise YoungYongmei ChenJennifer CullenInger L RosnerIsabell A SesterhennAlbert DobiGregory ChesnutClesson TurnerClifton DalgardMatthew D WilkersonHarvey B PollardShiv SrivastavaGyorgy PetrovicsPublished in: Nature communications (2022)
In prostate cancer, emerging data highlight the role of DNA damage repair genes (DDRGs) in aggressive forms of the disease. However, DDRG mutations in African American men are not yet fully defined. Here, we profile germline mutations in all known DDRGs (N = 276) using whole genome sequences from blood DNA of a matched cohort of patients with primary prostate cancer comprising of 300 African American and 300 European Ancestry prostate cancer patients, to determine whether the mutation status can enhance patient stratification for specific targeted therapies. Here, we show that only 13 of the 46 DDRGs identified with pathogenic/likely pathogenic mutations are present in both African American and European ancestry patients. Importantly, RAD family genes (RAD51, RAD54L, RAD54B), which are potentially targetable, as well as PMS2 and BRCA1, are among the most frequently mutated DDRGs in African American, but not in European Ancestry patients.
Keyphrases
- african american
- dna damage
- prostate cancer
- dna repair
- end stage renal disease
- radical prostatectomy
- newly diagnosed
- oxidative stress
- ejection fraction
- genome wide
- peritoneal dialysis
- prognostic factors
- bioinformatics analysis
- gene expression
- patient reported outcomes
- big data
- artificial intelligence
- machine learning
- case report
- genome wide association study
- patient reported
- circulating tumor
- middle aged
- cell free
- single molecule
- wild type