Halvade somatic: Somatic variant calling with Apache Spark.

Dries DecapLouise de Schaetzen van BrienenMaarten LarmuseauPascal CostanzaCharlotte HerzeelRoel WuytsKathleen Marchal Jan Fostier

Published in: GigaScience (2022)

To our knowledge, Halvade Somatic is the first somatic variant calling pipeline that leverages Big Data processing platforms and provides reliable, scalable performance. Source code is freely available.

Keyphrases

big data
copy number
artificial intelligence
machine learning
healthcare
dna methylation