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Chromosome-level genome assembly of the Asian aspen Populus davidiana Dode.

Eun-Kyung BaeMin-Jeong KangSeung-Jae LeeEung-Jun ParkKi-Tae Kim
Published in: Scientific data (2023)
The genome of Populus davidiana, a keystone aspen species, has been sequenced to improve our understanding of the evolutionary and functional genomics of the Populus genus. The Hi-C scaffolding genome assembly resulted in a 408.1 Mb genome with 19 pseudochromosomes. The BUSCO assessment revealed that 98.3% of the genome matched the embryophytes dataset. A total of 31,862 protein-coding sequences were predicted, of which 31,619 were functionally annotated. The assembled genome was composed of 44.9% transposable elements. These findings provide new knowledge about the characteristics of the P. davidiana genome and will facilitate comparative genomics and evolutionary research on the genus Populus.
Keyphrases
  • genome wide
  • single cell
  • dna methylation
  • gene expression
  • copy number
  • small molecule
  • binding protein