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Nonlinear Impact of Electrolyte Solutions on Protein Dynamics.

Hosein Geraili DaronkolaBenedikt SöldnerHimanshu SinghRasmus LinserAna Vila Verde
Published in: Chembiochem : a European journal of chemical biology (2024)
Halophilic organisms have adapted to multi-molar salt concentrations, their cytoplasmic proteins functioning despite stronger attraction between hydrophobic groups. These proteins, of interest in biotechnology because of decreasing fresh-water resources, have excess acidic amino acids. It has been suggested that conformational fluctuations - critical for protein function - decrease in the presence of a stronger hydrophobic effect, and that an acidic proteome would counteract this decrease. However, our understanding of the salt- and acidic amino acid dependency of enzymatic activity is limited. Here, using solution NMR relaxation and molecular dynamics simulations for in total 14 proteins, we show that salt concentration has a limited and moreover non-monotonic impact on protein dynamics. The results speak against the conformational-fluctuations model, instead indicating that maintaining protein dynamics to ensure protein function is not an evolutionary driving force behind the acidic proteome of halophilic proteins.
Keyphrases
  • amino acid
  • molecular dynamics simulations
  • ionic liquid
  • protein protein
  • single molecule
  • magnetic resonance
  • binding protein
  • molecular dynamics
  • hydrogen peroxide
  • nitric oxide
  • solid state
  • aqueous solution