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QSPRs for Molecular Diffusion Coefficients in Polymeric Passive Samplers: A Comparison of Simple Molecular and Quantum-mechanical Sigma-moment Descriptors.

Alina M LampicDonald MackayJ Mark Parnis
Published in: Molecular informatics (2019)
Linear quantitative structure-property relationships (QSPRs) for the prediction of diffusion coefficients (log Dp ) were developed for organic contaminants in two common passive sampler materials, polydimethylsiloxane (PDMS) and low-density polyethylene (LDPE). Literature data was compiled for both PDMS and LDPE resulting in final data sets of 196 and 79 compounds, respectively. Data sets contained compounds with log Dp values that ranged over about 5 log units and 3 log units for PDMS and LDPE, respectively. The quality of log Dp prediction using either simple molecular descriptors or quantum-chemical based COSMO-RS sigma moment descriptors was compared for both materials. For PDMS, the sigma moment descriptor QSPR had the best predictivity with a correlation coefficient of R2 =0.85 and root mean square error (RMSE) of 0.36 for log Dp . The molecular descriptor QSPR resulted in a correlation coefficient of R2 =0.78 and RMSE of 0.45 for log Dp . For LDPE, the molecular descriptor QSPR had the best predictivity, with the final correlation coefficient of R2 =0.86 and RMSE of 0.21 for log Dp . The sigma moment descriptor QSPR resulted in a correlation coefficient of R2 =0.66 and RMSE of 0.33 for log Dp . The purely electronic structure-based sigma moments are therefore shown to be a viable option for descriptors compared to the more commonly used molecular descriptors for organic contaminants in PDMS. The significance of the descriptors in each QSPR is discussed.
Keyphrases
  • systematic review
  • electronic health record
  • big data
  • single molecule
  • molecular dynamics
  • diffusion weighted imaging
  • machine learning
  • magnetic resonance
  • high resolution
  • drinking water
  • mass spectrometry
  • quantum dots