Transcriptome Profiling of Etridiazole-Exposed Zebrafish ( Danio rerio ) Embryos Reveals Pathways Associated with Cardiac and Ocular Toxicities.
Bala Murali Krishna VasamsettiKyongmi ChonChang-Young YoonJuyeong KimJi-Yeong ChoiSojeong HwangKyeong-Hun ParkPublished in: International journal of molecular sciences (2023)
Etridiazole (EDZ) is a thiadiazole-containing fungicide commonly used to control Pythium and Phytophthora spp. Although previous studies have shown that EDZ is teratogenic, the exact molecular mechanisms underlying its toxicity remain unknown. In this study, a zebrafish ( Danio rerio ; ZF) model was used to explore the molecular pathways associated with EDZ toxicity. The whole transcriptome of ZF embryos exposed to 96 h of EDZ was analyzed, along with developmental abnormalities. EDZ-induced malformations were primarily related to the eyes, heart, and growth of the ZF. Compared to untreated ZF, etridiazole-treated ZF had 2882 differentially expressed genes (DEGs), consisting of 1651 downregulated genes and 1231 upregulated genes. Gene ontology enrichment analysis showed that DEGs were involved in biological processes, such as sensory perception, visual perception, sensory organ development, and visual system development, and showed transmembrane transporter and peptidase regulator activities. Metabolism, phototransduction, aminoacyl-tRNA biosynthesis, MAPK signaling pathway, calcium signaling pathway, and vascular smooth muscle contraction were among the most enriched KEGG pathways. The qPCR analyses of the eight random genes were in good agreement with the transcriptome data. These results suggest several putative mechanisms underlying EDZ-induced developmental deformities in ZF.
Keyphrases
- genome wide
- signaling pathway
- smooth muscle
- genome wide identification
- dna methylation
- single cell
- pi k akt
- oxidative stress
- high glucose
- bioinformatics analysis
- rna seq
- diabetic rats
- copy number
- genome wide analysis
- gene expression
- heart failure
- transcription factor
- induced apoptosis
- drug induced
- electronic health record
- left ventricular
- endothelial cells
- single molecule
- optical coherence tomography
- endoplasmic reticulum stress
- deep learning