Configurational Analysis by Residual Dipolar Coupling Driven Floating Chirality Distance Geometry Calculations.
Stefan ImmelMatthias KöckMichael ReggelinPublished in: Chemistry (Weinheim an der Bergstrasse, Germany) (2018)
A new method implemented into a computer program (ConArch+ ) has been developed and applied to demonstrate the successful implementation of residual dipolar couplings (RDCs) in distance geometry (DG) calculations for the configurational assignment of chiral compounds. Unlike established protocols, the new approach combines floating chirality (fc) in 4D- and 3D-distance bounds driven dynamics (DDD) calculations with structural information from RDCs. Thus, relative configurations of chiral compounds were generated only by observables (e.g., NOEs, RDCs) rendering tedious evaluations of calculated structures against RDCs obsolete. We demonstrate the potential of this novel procedure by the simultaneous determination of the configuration and the conformation of three natural products, (-)-isopinocampheol (1), tubocurarine (2), and vincristine (3), as well as for diisopropylidene-β-d-fructopyranose (4).
Keyphrases
- simultaneous determination
- molecular dynamics simulations
- density functional theory
- molecular dynamics
- liquid chromatography tandem mass spectrometry
- monte carlo
- quality improvement
- high performance liquid chromatography
- tandem mass spectrometry
- liquid chromatography
- primary care
- capillary electrophoresis
- ultra high performance liquid chromatography
- healthcare
- deep learning
- solid phase extraction
- high resolution
- minimally invasive
- gas chromatography