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Cell type specificity of mosaic chromosome 1q gain resolved by snRNA-seq in a case of epilepsy with hyaline protoplasmic astrocytopathy.

Kun LengCathryn Rene CadwellW Patrick DevineTarik TihanZhongxia QiNilika S SinghalOrit GlennSherry KamiyaArun P WiitaAmy BergerJoseph T ShiehErron W TitusMercedes F ParedesVaibhav Upadhyay
Published in: bioRxiv : the preprint server for biology (2024)
snRNA-seq may be used to infer the cell type-specificity of mosaic chromosomal copy number changes and identify associated gene expression alterations, which in the case of chr1q gain may involve aberrations in cell migration. Future studies using spatial profiling could yield further insights on the molecular signatures of HPA.
Keyphrases
  • copy number
  • genome wide
  • cell migration
  • dna methylation
  • gene expression
  • mitochondrial dna
  • single cell
  • rna seq
  • structural basis
  • current status
  • case control