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TMRS: an algorithm for computing the time to the most recent substitution event from a multiple alignment column.

Hisanori KiryuYuto IchikawaYasuhiro Kojima
Published in: Algorithms for molecular biology : AMB (2019)
We have presented algorithms to estimate the evolutionary time ( t MRS ) to the most recent substitution event from a multiple alignment column by using a probabilistic model of sequence evolution. Our algorithms will be useful for Evo-Devo studies, as they facilitate screening potential genomic sites that have played an important role in the acquisition of unique biological features by target species.
Keyphrases
  • machine learning
  • deep learning
  • liquid chromatography
  • solid phase extraction
  • mass spectrometry
  • copy number
  • risk assessment
  • case control
  • human health
  • dna methylation
  • amino acid
  • high resolution