Self-inspired learning for denoising live-cell super-resolution microscopy.
Liying QuShiqun ZhaoYuanyuan HuangXianxin YeKunhao WangYuzhen LiuXianming LiuHeng MaoGuangwei HuWei ChenChangliang GuoJiaye HeJiubin TanHaoyu LiLiangyi ChenWeisong ZhaoPublished in: Nature methods (2024)
Every collected photon is precious in live-cell super-resolution (SR) microscopy. Here, we describe a data-efficient, deep learning-based denoising solution to improve diverse SR imaging modalities. The method, SN2N, is a Self-inspired Noise2Noise module with self-supervised data generation and self-constrained learning process. SN2N is fully competitive with supervised learning methods and circumvents the need for large training set and clean ground truth, requiring only a single noisy frame for training. We show that SN2N improves photon efficiency by one-to-two orders of magnitude and is compatible with multiple imaging modalities for volumetric, multicolor, time-lapse SR microscopy. We further integrated SN2N into different SR reconstruction algorithms to effectively mitigate image artifacts. We anticipate SN2N will enable improved live-SR imaging and inspire further advances.
Keyphrases
- high resolution
- deep learning
- machine learning
- single molecule
- convolutional neural network
- high speed
- air pollution
- electronic health record
- optical coherence tomography
- high throughput
- big data
- mass spectrometry
- artificial intelligence
- magnetic resonance imaging
- computed tomography
- virtual reality
- photodynamic therapy
- data analysis
- contrast enhanced