GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species.

Verena Esther Kutschera Marcin KierczakTom van der ValkJohanna von SethNicolas DussexEdana LordMarianne DehasqueDavid W G StantonPayam Emami KhoonsariBjörn NystedtLove DalénDavid Díez-Del-Molino

Published in: BMC bioinformatics (2022)

GenErode is a user-friendly and reproducible pipeline that enables the standardization of genomic erosion indices from temporally sampled whole genome re-sequencing data.

Keyphrases

electronic health record
single cell
copy number
big data
genome wide
low cost
dna methylation
data analysis
artificial intelligence