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IDSSIM: an lncRNA functional similarity calculation model based on an improved disease semantic similarity method.

Wenwen FanJunliang ShangFeng LiYan SunShasha YuanJin-Xing Liu
Published in: BMC bioinformatics (2020)
Results demonstrated that in terms of ROC curves and AUC values, IDSSIM is superior to compared models, and can improve accuracy of disease semantic similarity effectively, leading to increase the association prediction ability of the IDSSIM-WKNKN model; in terms of case studies, most of potential disease-associated lncRNAs predicted by IDSSIM can be confirmed by databases and literatures, implying that IDSSIM can serve as a promising tool for predicting lncRNA functions, identifying potential lncRNA-disease associations, and pre-screening candidate lncRNAs to perform biological experiments. The IDSSIM code, all experimental data and prediction results are available online at https://github.com/CDMB-lab/IDSSIM .
Keyphrases
  • long non coding rna
  • healthcare
  • long noncoding rna
  • big data
  • transcription factor
  • machine learning
  • social media
  • deep learning
  • human health
  • health information
  • genome wide identification