Microbiome Sex-Related Diversity in Non-Muscle-Invasive Urothelial Bladder Cancer.
Konrad BilskiNatalia Żeber-LubeckaMaria KuleckaMichalina DąbrowskaAneta BałabasJerzy OstrowskiAleksandra DobruchJakub DobruchPublished in: Current issues in molecular biology (2024)
Sex-specific discrepancies in bladder cancer (BCa) are reported, and new studies imply that microbiome may partially explain the diversity. We aim to provide characterization of the bladder microbiome in both sexes diagnosed with non-muscle-invasive BCa with specific insight into cancer grade. In our study, 16S rRNA next-generation sequencing was performed on midstream urine, bladder tumor sample, and healthy-appearing bladder mucosa. Bacterial DNA was isolated using QIAamp Viral RNA Mini Kit. Metagenomic analysis was performed using hypervariable fragments of the 16S rRNA gene on Ion Torrent Personal Genome Machine platform. Of 41 sample triplets, 2153 taxa were discovered: 1739 in tumor samples, 1801 in healthy-appearing bladder mucosa and 1370 in midstream urine. Women were found to have smaller taxa richness in Chao1 index than men ( p = 0.03). In comparison to low-grade tumors, patients with high-grade lesions had lower bacterial diversity and richness in urine. Significant differences between sexes in relative abundance of communities at family level were only observed in high-grade tumors.
Keyphrases
- high grade
- low grade
- spinal cord injury
- urinary tract
- skeletal muscle
- copy number
- circulating tumor
- genome wide
- sars cov
- papillary thyroid
- antibiotic resistance genes
- type diabetes
- squamous cell carcinoma
- high throughput
- polycystic ovary syndrome
- young adults
- cell free
- dna methylation
- single molecule
- lymph node metastasis
- adipose tissue
- nucleic acid
- circulating tumor cells
- genome wide identification
- drug induced
- pregnancy outcomes