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Brightest path tracing: A Python package to trace the brightest path in 2D and 3D images.

Vasudha JhaRobert H Cudmore
Published in: bioRxiv : the preprint server for biology (2023)
Brightest path tracing is a widely used image processing technique in several fields including biology, geography, and geology. However, despite the availability of many image processing libraries in Python, few offer an out-of-the-box implementation of a bright-est path tracing algorithm. This paper presents a Python package, brightest-path-lib , that efficiently finds the path with maximum brightness between points in a 2D or 3D image. An example graphical user interface is provided as a Napari plugin. Taken together, the package and plugin provide a powerful and extensible tool for users to efficiently trace structures of interest in 2D or 3D images, regardless of the type of structure being analyzed.
Keyphrases
  • deep learning
  • convolutional neural network
  • machine learning
  • healthcare
  • primary care
  • optical coherence tomography
  • heavy metals
  • transcription factor
  • high resolution