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SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration.

Mateo GraySebastian WillHosna Jabbari
Published in: Algorithms for molecular biology : AMB (2024)
Our SparseRNAFolD algorithm is an MFE-based algorithm that guarantees optimality of result and employs the most general energy model, including dangle contributions. We provide a basis for applying dangles to sparsified recursion in a pseudoknot-free model that has the potential to be extended to pseudoknots.
Keyphrases
  • machine learning
  • deep learning
  • neural network
  • single molecule
  • risk assessment
  • human health