A fast segmentation-free fully automated approach to white matter injury detection in preterm infants.
Subhayan MukherjeeIrene ChengSteven MillerTing GuoVann ChauAnup BasuPublished in: Medical & biological engineering & computing (2018)
White matter injury (WMI) is the most prevalent brain injury in the preterm neonate leading to developmental deficits. However, detecting WMI in magnetic resonance (MR) images of preterm neonate brains using traditional WM segmentation-based methods is difficult mainly due to lack of reliable preterm neonate brain atlases to guide segmentation. Hence, we propose a segmentation-free, fast, unsupervised, atlas-free WMI detection method. We detect the ventricles as blobs using a fast linear maximally stable extremal regions algorithm. A reference contour equidistant from the blobs and the brain-background boundary is used to identify tissue adjacent to the blobs. Assuming normal distribution of the gray-value intensity of this tissue, the outlier intensities in the entire brain region are identified as potential WMI candidates. Thereafter, false positives are discriminated using appropriate heuristics. Experiments using an expert-annotated dataset show that the proposed method runs 20 times faster than our earlier work which relied on time-consuming segmentation of the WM region, without compromising WMI detection accuracy. Graphical Abstract Key Steps of Segmentation-free WMI Detection.
Keyphrases
- deep learning
- white matter
- convolutional neural network
- brain injury
- magnetic resonance
- preterm infants
- machine learning
- low birth weight
- loop mediated isothermal amplification
- multiple sclerosis
- real time pcr
- cerebral ischemia
- subarachnoid hemorrhage
- label free
- preterm birth
- gestational age
- magnetic resonance imaging
- high throughput
- risk assessment
- computed tomography
- single cell
- blood brain barrier
- high intensity