Automated recognition of functional compound-protein relationships in literature.

Kersten DöringAmmar QaseemMichael BecerJianyu LiPankaj MishraMingjie GaoPascal KirchnerFlorian SauterKiran K Telukunta Aurélien F A Moumbock Philippe Thomas Stefan Günther

Published in: PloS one (2020)

The software for the tested kernels, the benchmark, the processed 29 million PubMed abstracts, all evaluation scripts, as well as the scripts for processing the complete PubMed database are freely available at https://github.com/KerstenDoering/CPI-Pipeline.

Keyphrases

systematic review
machine learning
deep learning
high throughput
protein protein
adverse drug
amino acid
binding protein
single cell