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Chromatin conformation capture in the clinic: 4C-seq/HiC distinguishes pathogenic from neutral duplications at the GPR101 locus.

Adrian F DalyLeslie A DunningtonDavid F Rodriguez-BuriticaErica SpiegelFrancesco BrancatiGiovanna MantovaniVandana M RawalFabio Rueda FauczHadia HijaziJean-Hubert CabergAnna Maria NardoneMario BengalaPaola FortugnoGiulia Del SindacoMarta RagoneseHelen GouldSalvatore CannavòPatrick PétrossiansAndrea LaniaJames R. LupskiAlbert BeckersConstantine A StratakisBrynn LevyGiampaolo TrivellinMartin Franke
Published in: Genome medicine (2024)
This study highlights the importance of TAD boundaries and chromatin interactions in determining the functional impact of copy number variants and provides proof-of-concept for using 4C/HiC-seq as a clinical tool to acquire crucial information for genetic counseling and to support clinical decision-making in cases of suspected TADopathies.
Keyphrases
  • copy number
  • genome wide
  • mitochondrial dna
  • dna methylation
  • primary care
  • rna seq
  • healthcare
  • molecular dynamics simulations
  • health information
  • hepatitis c virus
  • human immunodeficiency virus