Chromatin conformation capture in the clinic: 4C-seq/HiC distinguishes pathogenic from neutral duplications at the GPR101 locus.
Adrian F DalyLeslie A DunningtonDavid F Rodriguez-BuriticaErica SpiegelFrancesco BrancatiGiovanna MantovaniVandana M RawalFabio Rueda FauczHadia HijaziJean-Hubert CabergAnna Maria NardoneMario BengalaPaola FortugnoGiulia Del SindacoMarta RagoneseHelen GouldSalvatore CannavòPatrick PétrossiansAndrea LaniaJames R. LupskiAlbert BeckersConstantine A StratakisBrynn LevyGiampaolo TrivellinMartin FrankePublished in: Genome medicine (2024)
This study highlights the importance of TAD boundaries and chromatin interactions in determining the functional impact of copy number variants and provides proof-of-concept for using 4C/HiC-seq as a clinical tool to acquire crucial information for genetic counseling and to support clinical decision-making in cases of suspected TADopathies.