Label-Free Identification of Exosomes using Raman Spectroscopy and Machine Learning.
Ugur ParlatanMehmet Ozgun OzenIbrahim KecogluBatuhan KoyuncuHulya TorunDavod KhalafkhanyIrem LocMehmet Giray OgutFatih InciDemir AkinIhsan SolarogluNesrin ÖzörenMehmet Burçin ÜnlüUtkan DemirciPublished in: Small (Weinheim an der Bergstrasse, Germany) (2023)
Exosomes, nano-sized extracellular vesicles (EVs) secreted from cells, carry various cargo molecules reflecting their cells of origin. As EV content, structure, and size are highly heterogeneous, their classification via cargo molecules by determining their origin is challenging. Here, a method is presented combining surface-enhanced Raman spectroscopy (SERS) with machine learning algorithms to employ the classification of EVs derived from five different cell lines to reveal their cellular origins. Using an artificial neural network algorithm, it is shown that the label-free Raman spectroscopy method's prediction ratio correlates with the ratio of HT-1080 exosomes in the mixture. This machine learning-assisted SERS method enables a new direction through label-free investigation of EV preparations by differentiating cancer cell-derived exosomes from those of healthy. This approach will potentially open up new avenues of research for early detection and monitoring of various diseases, including cancer.
Keyphrases
- raman spectroscopy
- label free
- machine learning
- mesenchymal stem cells
- induced apoptosis
- artificial intelligence
- stem cells
- deep learning
- neural network
- big data
- papillary thyroid
- cell cycle arrest
- squamous cell
- minimally invasive
- bone marrow
- oxidative stress
- squamous cell carcinoma
- cell death
- endoplasmic reticulum stress
- gene expression
- signaling pathway
- genome wide
- single cell
- magnetic resonance
- quantum dots