Epigenetic DNA Modifications Upregulate SPRY2 in Human Colorectal Cancers.
Alexei J StuckelShuai ZengZhen LyuTripti KhareXu ZhangUrszula DoughertyReba MustafiQiong ZhangTrupti JoshiMarc BissonnetteSamrat Roy ChoudhurySharad KharePublished in: Cells (2021)
Conventional wisdom is that Sprouty2 (SPRY2), a suppressor of Receptor Tyrosine Kinase (RTK) signaling, functions as a tumor suppressor and is downregulated in many solid tumors. We reported, for the first time, that increased expression of SPRY2 augments cancer phenotype and Epithelial-Mesenchymal-Transition (EMT) in colorectal cancer (CRC). In this report, we assessed epigenetic DNA modifications that regulate SPRY2 expression in CRC. A total of 4 loci within SPRY2 were evaluated for 5mC using Combined Bisulfite Restriction Analysis (COBRA). Previously sequenced 5hmC nano-hmC seal data within SPRY2 promoter and gene body were evaluated in CRC. Combined bioinformatics analyses of SPRY2 CRC transcripts by RNA-seq/microarray and 450K methyl-array data archived in The Cancer Genome Atlas (TCGA) and GEO database were performed. SPRY2 protein in CRC tumors and cells was measured by Western blotting. Increased SPRY2 mRNA was observed across several CRC datasets and increased protein expression was observed among CRC patient samples. For the first time, SPRY2 hypomethylation was identified in adenocarcinomas in the promoter and gene body. We also revealed, for the first time, increases of 5hmC deposition in the promoter region of SPRY2 in CRC. SPRY2 promoter hypomethylation and increased 5hmC may play an influential role in upregulating SPRY2 in CRC.
Keyphrases
- dna methylation
- rna seq
- epithelial mesenchymal transition
- gene expression
- tyrosine kinase
- single cell
- genome wide
- transcription factor
- endothelial cells
- squamous cell carcinoma
- machine learning
- papillary thyroid
- binding protein
- small molecule
- signaling pathway
- high throughput
- epidermal growth factor receptor
- circulating tumor
- big data
- squamous cell
- single molecule
- transforming growth factor
- endoplasmic reticulum stress
- artificial intelligence
- drug induced