Journal of biomedical semantics

Keyphrases

Publications

volume 15, number 1, 2024

Adrien Bibal, Nourah M Salem, Rémi Cardon, Elizabeth K White, Daniel E Acuna, Robin Burke, Lawrence E Hunter
RecSOI: recommending research directions using statements of ignorance. Journal of biomedical semantics 15 (1) (2024)
Rabia Azzi, Georgeta Bordea, Romain Griffier, Jean Noël Nikiema, Fleur Mougin
Enriching the FIDEO ontology with food-drug interactions from online knowledge sources. Journal of biomedical semantics 15 (1) (2024)
Lars Vogt, Tobias Kuhn, Hoehndorf Robert
Semantic units: organizing knowledge graphs into semantically meaningful units of representation. Journal of biomedical semantics 15 (1) (2024)
Daniel N Sosa, Georgiana Neculae, Julien Fauqueur, Russ B Altman
Elucidating the semantics-topology trade-off for knowledge inference-based pharmacological discovery. Journal of biomedical semantics 15 (1) (2024)
Lars Vogt, Tobias Kuhn, Robert Hoehndorf
Correction to: Semantic units: organizing knowledge graphs into semantically meaningful units of representation. Journal of biomedical semantics 15 (1) (2024)
Christian Witte, David M Schmidt, Philipp Cimiano
Comparing generative and extractive approaches to information extraction from abstracts describing randomized clinical trials. Journal of biomedical semantics 15 (1) (2024)
Rabia Azzi, Georgeta Bordea, Romain Griffier, Jean Noël Nikiema, Fleur Mougin
Enriching the FIDEO ontology with food-drug interactions from online knowledge sources. Journal of biomedical semantics 15 (1) (2024)
Jianfu Li, Yiming Li, Yuanyi Pan, Jinjing Guo, Zenan Sun, Fang Li, Yongqun He, Cui Tao
Mapping vaccine names in clinical trials to vaccine ontology using cascaded fine-tuned domain-specific language models. Journal of biomedical semantics 15 (1) (2024)
Abdullateef I Almudaifer, Whitney Covington, JaMor Hairston, Zachary Deitch, Ankit Anand, Caleb M Carroll, Estera Crisan, William Bradford, Lauren A Walter, Ellen F Eaton, Sue S Feldman, John D Osborne
Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection. Journal of biomedical semantics 15 (1) (2024)
Abdullateef I Almudaifer, Whitney Covington, JaMor Hairston, Zachary Deitch, Ankit Anand, Caleb M Carroll, Estera Crisan, William Bradford, Lauren A Walter, Ellen F Eaton, Sue S Feldman, John D Osborne
Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection. Journal of biomedical semantics 15 (1) (2024)
Rashmie Abeysinghe, Fengbo Zheng, Jay Shi, Samden D Lhatoo, Licong Cui
Leveraging logical definitions and lexical features to detect missing IS-A relations in biomedical terminologies. Journal of biomedical semantics 15 (1) (2024)
Benjamin Molinet, Santiago Marro, Elena Cabrio, Serena Villata
Explanatory argumentation in natural language for correct and incorrect medical diagnoses. Journal of biomedical semantics 15 (1) (2024)
Daniel N Sosa, Georgiana Neculae, Julien Fauqueur, Russ B Altman
Elucidating the semantics-topology trade-off for knowledge inference-based pharmacological discovery. Journal of biomedical semantics 15 (1) (2024)
Christian Witte, David M Schmidt, Philipp Cimiano
Comparing generative and extractive approaches to information extraction from abstracts describing randomized clinical trials. Journal of biomedical semantics 15 (1) (2024)
Rashmie Abeysinghe, Fengbo Zheng, Jay Shi, Samden D Lhatoo, Licong Cui
Leveraging logical definitions and lexical features to detect missing IS-A relations in biomedical terminologies. Journal of biomedical semantics 15 (1) (2024)
Rabia Azzi, Georgeta Bordea, Romain Griffier, Jean Noël Nikiema, Fleur Mougin
Enriching the FIDEO ontology with food-drug interactions from online knowledge sources. Journal of biomedical semantics 15 (1) (2024)
William D Duncan, Matthew Diller, Damion Dooley, William R Hogan, John Beverley
Concretizing plan specifications as realizables within the OBO foundry. Journal of biomedical semantics 15 (1) (2024)
Sarah Mullin, Robert McDougal, Kei-Hoi Cheung, Halil Kilicoglu, Amanda Beck, Caroline J Zeiss
Chemical entity normalization for successful translational development of Alzheimer's disease and dementia therapeutics. Journal of biomedical semantics 15 (1) (2024)
Adrien Bibal, Nourah M Salem, Rémi Cardon, Elizabeth K White, Daniel E Acuna, Robin Burke, Lawrence E Hunter
RecSOI: recommending research directions using statements of ignorance. Journal of biomedical semantics 15 (1) (2024)
Jie Zheng, Xingxian Li, Anna Maria Masci, Hayleigh Kahn, Anthony Huffman, Eliyas Asfaw, Yuanyi Pan, Jinjing Guo, Virginia He, Justin Song, Andrey I Seleznev, Asiyah Yu Lin, Yongqun He
Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis. Journal of biomedical semantics 15 (1) (2024)
Sarah Mullin, Robert McDougal, Kei-Hoi Cheung, Halil Kilicoglu, Amanda Beck, Caroline J Zeiss
Chemical entity normalization for successful translational development of Alzheimer's disease and dementia therapeutics. Journal of biomedical semantics 15 (1) (2024)
Mathias De Brouwer, Pieter Bonte, Dörthe Arndt, Miel Vander Sande, Anastasia Dimou, Ruben Verborgh, Filip De Turck, Femke Ongenae
Optimized continuous homecare provisioning through distributed data-driven semantic services and cross-organizational workflows. Journal of biomedical semantics 15 (1) (2024)
Sarah Mullin, Robert McDougal, Kei-Hoi Cheung, Halil Kilicoglu, Amanda Beck, Caroline J Zeiss
Chemical entity normalization for successful translational development of Alzheimer's disease and dementia therapeutics. Journal of biomedical semantics 15 (1) (2024)
Lars Vogt, Tobias Kuhn, Hoehndorf Robert
Semantic units: organizing knowledge graphs into semantically meaningful units of representation. Journal of biomedical semantics 15 (1) (2024)
Lars Vogt, Tobias Kuhn, Robert Hoehndorf
Correction to: Semantic units: organizing knowledge graphs into semantically meaningful units of representation. Journal of biomedical semantics 15 (1) (2024)
Daniel N Sosa, Georgiana Neculae, Julien Fauqueur, Russ B Altman
Elucidating the semantics-topology trade-off for knowledge inference-based pharmacological discovery. Journal of biomedical semantics 15 (1) (2024)
Lars Vogt, Tobias Kuhn, Hoehndorf Robert
Semantic units: organizing knowledge graphs into semantically meaningful units of representation. Journal of biomedical semantics 15 (1) (2024)
Rashmie Abeysinghe, Fengbo Zheng, Jay Shi, Samden D Lhatoo, Licong Cui
Leveraging logical definitions and lexical features to detect missing IS-A relations in biomedical terminologies. Journal of biomedical semantics 15 (1) (2024)
Anthony Huffman, Xumeng Zhang, Meghana Lanka, Jie Zheng, Anna Maria Masci, Yongqun He
Ontological representation, modeling, and analysis of parasite vaccines. Journal of biomedical semantics 15 (1) (2024)
Jie Zheng, Xingxian Li, Anna Maria Masci, Hayleigh Kahn, Anthony Huffman, Eliyas Asfaw, Yuanyi Pan, Jinjing Guo, Virginia He, Justin Song, Andrey I Seleznev, Asiyah Yu Lin, Yongqun He
Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis. Journal of biomedical semantics 15 (1) (2024)
Adrien Bibal, Nourah M Salem, Rémi Cardon, Elizabeth K White, Daniel E Acuna, Robin Burke, Lawrence E Hunter
RecSOI: recommending research directions using statements of ignorance. Journal of biomedical semantics 15 (1) (2024)
Anthony Huffman, Xumeng Zhang, Meghana Lanka, Jie Zheng, Anna Maria Masci, Yongqun He
Ontological representation, modeling, and analysis of parasite vaccines. Journal of biomedical semantics 15 (1) (2024)
Christian Witte, David M Schmidt, Philipp Cimiano
Comparing generative and extractive approaches to information extraction from abstracts describing randomized clinical trials. Journal of biomedical semantics 15 (1) (2024)
Jie Zheng, Xingxian Li, Anna Maria Masci, Hayleigh Kahn, Anthony Huffman, Eliyas Asfaw, Yuanyi Pan, Jinjing Guo, Virginia He, Justin Song, Andrey I Seleznev, Asiyah Yu Lin, Yongqun He
Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis. Journal of biomedical semantics 15 (1) (2024)
William D Duncan, Matthew Diller, Damion Dooley, William R Hogan, John Beverley
Concretizing plan specifications as realizables within the OBO foundry. Journal of biomedical semantics 15 (1) (2024)
Guglielmo Faggioli, Laura Menotti, Stefano Marchesin, Adriano Chió, Arianna Dagliati, Mamede de Carvalho, Marta Gromicho, Umberto Manera, Eleonora Tavazzi, Giorgio Maria Di Nunzio, Gianmaria Silvello, Nicola Ferro
An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology. Journal of biomedical semantics 15 (1) (2024)
William D Duncan, Matthew Diller, Damion Dooley, William R Hogan, John Beverley
Concretizing plan specifications as realizables within the OBO foundry. Journal of biomedical semantics 15 (1) (2024)
Guglielmo Faggioli, Laura Menotti, Stefano Marchesin, Adriano Chió, Arianna Dagliati, Mamede de Carvalho, Marta Gromicho, Umberto Manera, Eleonora Tavazzi, Giorgio Maria Di Nunzio, Gianmaria Silvello, Nicola Ferro
An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology. Journal of biomedical semantics 15 (1) (2024)
Jianfu Li, Yiming Li, Yuanyi Pan, Jinjing Guo, Zenan Sun, Fang Li, Yongqun He, Cui Tao
Mapping vaccine names in clinical trials to vaccine ontology using cascaded fine-tuned domain-specific language models. Journal of biomedical semantics 15 (1) (2024)
Jianfu Li, Yiming Li, Yuanyi Pan, Jinjing Guo, Zenan Sun, Fang Li, Yongqun He, Cui Tao
Mapping vaccine names in clinical trials to vaccine ontology using cascaded fine-tuned domain-specific language models. Journal of biomedical semantics 15 (1) (2024)
Beata Fonferko-Shadrach, Huw Strafford, Carys Jones, Russell A Khan, Sharon Brown, Jenny Edwards, Jonathan Hawken, Luke E Shrimpton, Catharine P White, Robert Powell, Inder M S Sawhney, William O Pickrell, Arron S Lacey
Annotation of epilepsy clinic letters for natural language processing. Journal of biomedical semantics 15 (1) (2024)
Sarah Mullin, Robert McDougal, Kei-Hoi Cheung, Halil Kilicoglu, Amanda Beck, Caroline J Zeiss
Chemical entity normalization for successful translational development of Alzheimer's disease and dementia therapeutics. Journal of biomedical semantics 15 (1) (2024)
Mathias De Brouwer, Pieter Bonte, Dörthe Arndt, Miel Vander Sande, Anastasia Dimou, Ruben Verborgh, Filip De Turck, Femke Ongenae
Optimized continuous homecare provisioning through distributed data-driven semantic services and cross-organizational workflows. Journal of biomedical semantics 15 (1) (2024)
Benjamin Molinet, Santiago Marro, Elena Cabrio, Serena Villata
Explanatory argumentation in natural language for correct and incorrect medical diagnoses. Journal of biomedical semantics 15 (1) (2024)
Lars Vogt, Tobias Kuhn, Hoehndorf Robert
Semantic units: organizing knowledge graphs into semantically meaningful units of representation. Journal of biomedical semantics 15 (1) (2024)

volume 14, number 1, 2023

Susana Nunes, Rita T Sousa, Catia Pesquita
Multi-domain knowledge graph embeddings for gene-disease association prediction. Journal of biomedical semantics 14 (1) (2023)
Maryam Basereh, Annalina Caputo, Rob Brennan
Automatic transparency evaluation for open knowledge extraction systems. Journal of biomedical semantics 14 (1) (2023)
Alban Gaignard, Thomas Rosnet, Frédéric De Lamotte, Vincent Lefort, Marie-Dominique Devignes
FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards. Journal of biomedical semantics 14 (1) (2023)
Oshani Seneviratne, Amar K Das, Shruthi Chari, Nkechinyere N Agu, Sabbir M Rashid, Jamie McCusker, Jade S Franklin, Miao Qi, Kristin P Bennett, Ching-Hua Chen, James A Hendler, Deborah L McGuinness
Semantically enabling clinical decision support recommendations. Journal of biomedical semantics 14 (1) (2023)
Fuqi Xu, Nick Juty, Carole Goble, Simon Jupp, Helen Parkinson, Mélanie Courtot
Features of a FAIR vocabulary. Journal of biomedical semantics 14 (1) (2023)