Aaron R Dinner

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 39

Top Topics

Saccharomyces Cerevisiae

Finite Element Analysis

Top Venues

The Journal of chemical physics

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Spencer C Guo, Rong Shen, Benoı T Roux, Aaron R Dinner
Dynamics of activation in the voltage-sensing domain of Ciona intestinalis phosphatase Ci-VSP. Nature communications 15 (1) (2024)
Steven A Redford, Jonathan Colen, Jordan L Shivers, Sasha Zemsky, Mehdi Molaei, Carlos Floyd, Paul V Ruijgrok, Vincenzo Vitelli, Zev Bryant, Aaron R Dinner, Margaret Lise Gardel
Motor crosslinking augments elasticity in active nematics. Soft matter 20 (11) (2024)
Spencer C Guo, Rong Shen, Benoı T Roux, Aaron R Dinner
Dynamics of activation in the voltage-sensing domain of Ciona intestinalis phosphatase Ci-VSP. Nature communications 15 (1) (2024)
Steven A Redford, Jonathan Colen, Jordan L Shivers, Sasha Zemsky, Mehdi Molaei, Carlos Floyd, Paul V Ruijgrok, Vincenzo Vitelli, Zev Bryant, Aaron R Dinner, Margaret Lise Gardel
Motor crosslinking augments elasticity in active nematics. Soft matter 20 (11) (2024)
Spencer C Guo, Rong Shen, Benoı T Roux, Aaron R Dinner
Dynamics of activation in the voltage-sensing domain of Ciona intestinalis phosphatase Ci-VSP. Nature communications 15 (1) (2024)
Steven A Redford, Jonathan Colen, Jordan L Shivers, Sasha Zemsky, Mehdi Molaei, Carlos Floyd, Paul V Ruijgrok, Vincenzo Vitelli, Zev Bryant, Aaron R Dinner, Margaret Lise Gardel
Motor crosslinking augments elasticity in active nematics. Soft matter (2024)
Steven A Redford, Jonathan Colen, Jordan L Shivers, Sasha Zemsky, Mehdi Molaei, Carlos Floyd, Paul V Ruijgrok, Vincenzo Vitelli, Zev Bryant, Aaron R Dinner, Margaret Lise Gardel
Motor crosslinking augments elasticity in active nematics. Soft matter 20 (11) (2024)
Ning Zhang, Damini Sood, Spencer C Guo, Nanhao Chen, Adam Antoszewski, Tegan Marianchuk, Archana Chavan, Supratim Dey, Yunxian Xiao, Lu Hong, Xiangda Peng, Michael Baxa, Carrie Partch, Lee-Ping Wang, Tobin R Sosnick, Aaron R Dinner, Andy LiWang
Temperature-Dependent Fold-Switching Mechanism of the Circadian Clock Protein KaiB. bioRxiv : the preprint server for biology (2024)
Spencer C Guo, Rong Shen, Benoı T Roux, Aaron R Dinner
Dynamics of activation in the voltage-sensing domain of Ciona intestinalis phosphatase Ci-VSP. Nature communications 15 (1) (2024)
Catherine G Triandafillou, Rosalind Wenshan Pan, Aaron R Dinner, D Allan Drummond
Pervasive, conserved secondary structure in highly charged protein regions. PLoS computational biology 19 (10) (2023)
Catherine G Triandafillou, Rosalind Wenshan Pan, Aaron R Dinner, D Allan Drummond
Pervasive, conserved secondary structure in highly charged protein regions. bioRxiv : the preprint server for biology (2023)
John Strahan, Spencer C Guo, Chatipat Lorpaiboon, Aaron R Dinner, Jonathan Weare
Inexact iterative numerical linear algebra for neural network-based spectral estimation and rare-event prediction. The Journal of chemical physics 159 (1) (2023)
Catherine G Triandafillou, Rosalind Wenshan Pan, Aaron R Dinner, D Allan Drummond
Pervasive, conserved secondary structure in highly charged protein regions. bioRxiv : the preprint server for biology (2023)
Xiang Sherry Li, Brian Van Koten, Aaron R Dinner, Erik H Thiede
Understanding the sources of error in MBAR through asymptotic analysis. The Journal of chemical physics 158 (21) (2023)
Carlos Floyd, Suriyanarayanan Vaikuntanathan, Aaron R Dinner
Simulating structured fluids with tensorial viscoelasticity. The Journal of chemical physics 158 (5) (2023)
Carlos Floyd, Arthur T Molines, Xiangting Lei, Jerry E Honts, Fred Chang, Mary Williard Elting, Suriyanarayanan Vaikuntanathan, Aaron R Dinner, M Saad Bhamla
A unified model for the dynamics of ATP-independent ultrafast contraction. Proceedings of the National Academy of Sciences of the United States of America 120 (25) (2023)
Catherine G Triandafillou, Rosalind Wenshan Pan, Aaron R Dinner, D Allan Drummond
Pervasive, conserved secondary structure in highly charged protein regions. bioRxiv : the preprint server for biology (2023)
Soo Ji Kim, Chris C Chi, Gopal Pattanayak, Aaron R Dinner, Michael J Rust
KidA, a multi-PAS domain protein, tunes the period of the cyanobacterial circadian oscillator. Proceedings of the National Academy of Sciences of the United States of America 119 (37) (2022)
Chatipat Lorpaiboon, Jonathan Weare, Aaron R Dinner
Augmented transition path theory for sequences of events. The Journal of chemical physics 157 (9) (2022)
Bodhi P Vani, Jonathan Weare, Aaron R Dinner
Computing transition path theory quantities with trajectory stratification. The Journal of chemical physics 157 (3) (2022)
Yuqing Qiu, Michael Nguyen, Glen M Hocky, Aaron R Dinner, Suriyanarayanan Vaikuntanathan
A strong nonequilibrium bound for sorting of cross-linkers on growing biopolymers. Proceedings of the National Academy of Sciences of the United States of America 118 (38) (2021)
Yashar Bashirzadeh, Steven A Redford, Chatipat Lorpaiboon, Alessandro Groaz, Hossein Moghimianavval, Thomas Litschel, Petra Schwille, Glen M Hocky, Aaron R Dinner, Allen P Liu
Actin crosslinker competition and sorting drive emergent GUV size-dependent actin network architecture. Communications biology 4 (1) (2021)
Lu Hong, Danylo O Lavrentovich, Archana Chavan, Eugene Leypunskiy, Eileen Li, Charles Matthews, Andy LiWang, Michael J Rust, Aaron R Dinner
Bayesian modeling reveals metabolite-dependent ultrasensitivity in the cyanobacterial circadian clock. Molecular systems biology 16 (6) (2021)
Adam Antoszewski, Chatipat Lorpaiboon, John Strahan, Aaron R Dinner
Kinetics of Phenol Escape from the Insulin R6 Hexamer. The journal of physical chemistry. B 125 (42) (2021)
Danielle R Scheff, Steven A Redford, Chatipat Lorpaiboon, Sayantan Majumdar, Aaron R Dinner, Margaret Lise Gardel
Actin filament alignment causes mechanical hysteresis in cross-linked networks. Soft matter 17 (22) (2021)
Rui Zhang, Steven A Redford, Paul V Ruijgrok, Nitin Kumar, Ali Mozaffari, Sasha Zemsky, Aaron R Dinner, Vincenzo Vitelli, Zev Bryant, Margaret Lise Gardel, Juan J de Pablo
Spatiotemporal control of liquid crystal structure and dynamics through activity patterning. Nature materials 20 (6) (2021)
Luis Busto-Moner, Chi-Jui Feng, Adam Antoszewski, Andrei Tokmakoff, Aaron R Dinner
Structural Ensemble of the Insulin Monomer. Biochemistry 60 (42) (2021)
John Strahan, Adam Antoszewski, Chatipat Lorpaiboon, Bodhi P Vani, Jonathan Weare, Aaron R Dinner
Long-Time-Scale Predictions from Short-Trajectory Data: A Benchmark Analysis of the Trp-Cage Miniprotein. Journal of chemical theory and computation 17 (5) (2021)
Monika Scholz, Kimberly L Weirich, Margaret Lise Gardel, Aaron R Dinner
Tuning molecular motor transport through cytoskeletal filament network organization. Soft matter 16 (8) (2020)
Chatipat Lorpaiboon, Erik Henning Thiede, Robert J Webber, Jonathan Weare, Aaron R Dinner
Integrated Variational Approach to Conformational Dynamics: A Robust Strategy for Identifying Eigenfunctions of Dynamical Operators. The journal of physical chemistry. B 124 (42) (2020)
Paraskevi Gkeka, Gabriel Stoltz, Amir Barati Farimani, Zineb Belkacemi, Michele Ceriotti, John D Chodera, Aaron R Dinner, Andrew L Ferguson, Jean-Bernard Maillet, Hervé Minoux, Christine Peter, Fabio Pietrucci, Ana Silveira, Alexandre Tkatchenko, Zofia Trstanova, Rafal Wiewiora, Tony Lelièvre
Machine Learning Force Fields and Coarse-Grained Variables in Molecular Dynamics: Application to Materials and Biological Systems. Journal of chemical theory and computation 16 (8) (2020)
Xiang Gao, Yuanwen Jiang, Yiliang Lin, Kyoung-Ho Kim, Yin Fang, Jaeseok Yi, Lingyuan Meng, Hoo-Cheol Lee, Zhiyue Lu, Owen Leddy, Rui Zhang, Qing Tu, Wei Feng, Vishnu Nair, Philip J Griffin, Fengyuan Shi, Gajendra S Shekhawat, Aaron R Dinner, Hong-Gyu Park, Bozhi Tian
Structured silicon for revealing transient and integrated signal transductions in microbial systems. Science advances 6 (7) (2020)
Adam Antoszewski, Chi-Jui Feng, Bodhi P Vani, Erik H Thiede, Lu Hong, Jonathan Weare, Andrei Tokmakoff, Aaron R Dinner
Insulin Dissociates by Diverse Mechanisms of Coupled Unfolding and Unbinding. The journal of physical chemistry. B 124 (27) (2020)
Catherine G Triandafillou, Christopher D Katanski, Aaron R Dinner, D Allan Drummond
Transient intracellular acidification regulates the core transcriptional heat shock response. eLife 9 (2020)
Simon L Freedman, Cristian Suarez, Jonathan D Winkelman, David R Kovar, Gregory A Voth, Aaron R Dinner, Glen M Hocky
Mechanical and kinetic factors drive sorting of F-actin cross-linkers on bundles. Proceedings of the National Academy of Sciences of the United States of America 116 (33) (2019)
Owen Leddy, Zhiyue Lu, Aaron R Dinner
Entropic constraints on the steady-state fitness of competing self-replicators. The Journal of chemical physics 149 (22) (2018)
Lu Hong, Bodhi P Vani, Erik H Thiede, Michael J Rust, Aaron R Dinner
Molecular dynamics simulations of nucleotide release from the circadian clock protein KaiC reveal atomic-resolution functional insights. Proceedings of the National Academy of Sciences of the United States of America 115 (49) (2018)
Eugene Leypunskiy, Jenny Lin, Haneul Yoo, UnJin Lee, Aaron R Dinner, Michael J Rust
The cyanobacterial circadian clock follows midday in vivo and in vitro. eLife 6 (2017)
Shiladitya Banerjee, Klevin Lo, Matthew K Daddysman, Alan Selewa, Thomas Kuntz, Aaron R Dinner, Norbert F Scherer
Biphasic growth dynamics control cell division in Caulobacter crescentus. Nature microbiology 2 (2017)