Tobin R Sosnick (Tobin S Sosnick)

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 54

Top Topics

Molecular Dynamics

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

bioRxiv : the preprint server for biology

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Ruofan Chen, Hendrik Glauninger, Darren N Kahan, Julia Shangguan, Joseph R Sachleben, Joshua A Riback, D Allan Drummond, Tobin R Sosnick
HDX-MS finds that partial unfolding with sequential domain activation controls condensation of a cellular stress marker. Proceedings of the National Academy of Sciences of the United States of America 121 (13) (2024)
Samantha Keyport Kik, Dana Christopher, Hendrik Glauninger, Caitlin Wong Hickernell, Jared A M Bard, Kyle M Lin, Allison H Squires, Michael Ford, Tobin R Sosnick, D Allan Drummond
An adaptive biomolecular condensation response is conserved across environmentally divergent species. Nature communications 15 (1) (2024)
Alex Kentsis, Tobin R Sosnick
Correction to "Trifluoroethanol Promotes Helix Formation by Destabilizing Backbone Exposure: Desolvation Rather than Native Hydrogen Bonding Defines the Kinetic Pathway of Dimeric Coiled Coil Folding". Biochemistry (2024)
Samantha Keyport Kik, Dana Christopher, Hendrik Glauninger, Caitlin Wong Hickernell, Jared A M Bard, Kyle M Lin, Allison H Squires, Michael Ford, Tobin R Sosnick, D Allan Drummond
An adaptive biomolecular condensation response is conserved across environmentally divergent species. Nature communications 15 (1) (2024)
Samantha Keyport Kik, Dana Christopher, Hendrik Glauninger, Caitlin Wong Hickernell, Jared A M Bard, Kyle M Lin, Allison H Squires, Michael Ford, Tobin R Sosnick, D Allan Drummond
An adaptive biomolecular condensation response is conserved across environmentally divergent species. Nature communications 15 (1) (2024)
Hendrik Glauninger, Jared A M Bard, Caitlin J Wong Hickernell, Edo M Airoldi, Weihan Li, Robert H Singer, Sneha Paul, Taekjip Ha, Tobin R Sosnick, Edward W J Wallace, D Allan Drummond
Transcriptome-wide mRNA condensation precedes stress granule formation and excludes stress-induced transcripts. bioRxiv : the preprint server for biology (2024)
Hendrik Glauninger, Jared A M Bard, Caitlin J Wong Hickernell, Edo M Airoldi, Weihan Li, Robert H Singer, Sneha Paul, Taekjip Ha, Tobin R Sosnick, Edward W J Wallace, D Allan Drummond
Transcriptome-wide mRNA condensation precedes stress granule formation and excludes stress-induced transcripts. bioRxiv : the preprint server for biology (2024)
Ruofan Chen, Hendrik Glauninger, Darren N Kahan, Julia Shangguan, Joseph R Sachleben, Joshua A Riback, D Allan Drummond, Tobin R Sosnick
HDX-MS finds that partial unfolding with sequential domain activation controls condensation of a cellular stress marker. Proceedings of the National Academy of Sciences of the United States of America 121 (13) (2024)
Michael C Baxa, Xiaoxuan Lin, Cedrick D Mukinay, Srinivas Chakravarthy, Joseph R Sachleben, Sarah Antilla, Nina Hartrampf, Joshua A Riback, Isabelle A Gagnon, Bradley L Pentelute, Patricia L Clark, Tobin R Sosnick
How hydrophobicity, side chains, and salt affect the dimensions of disordered proteins. Protein science : a publication of the Protein Society 33 (5) (2024)
Ruofan Chen, Hendrik Glauninger, Darren N Kahan, Julia Shangguan, Joseph R Sachleben, Joshua A Riback, D Allan Drummond, Tobin R Sosnick
HDX-MS finds that partial unfolding with sequential domain activation controls condensation of a cellular stress marker. Proceedings of the National Academy of Sciences of the United States of America 121 (13) (2024)
Michael C Baxa, Xiaoxuan Lin, Cedrick D Mukinay, Srinivas Chakravarthy, Joseph R Sachleben, Sarah Antilla, Nina Hartrampf, Joshua A Riback, Isabelle A Gagnon, Bradley L Pentelute, Patricia L Clark, Tobin R Sosnick
How hydrophobicity, side chains, and salt affect the dimensions of disordered proteins. Protein science : a publication of the Protein Society 33 (5) (2024)
Ruofan Chen, Hendrik Glauninger, Darren N Kahan, Julia Shangguan, Joseph R Sachleben, Joshua A Riback, D Allan Drummond, Tobin R Sosnick
HDX-MS finds that partial unfolding with sequential domain activation controls condensation of a cellular stress marker. Proceedings of the National Academy of Sciences of the United States of America 121 (13) (2024)
Hendrik Glauninger, Jared A M Bard, Caitlin J Wong Hickernell, Edo M Airoldi, Weihan Li, Robert H Singer, Sneha Paul, Taekjip Ha, Tobin R Sosnick, Edward W J Wallace, D Allan Drummond
Transcriptome-wide mRNA condensation precedes stress granule formation and excludes stress-induced transcripts. bioRxiv : the preprint server for biology (2024)
Samantha Keyport Kik, Dana Christopher, Hendrik Glauninger, Caitlin Wong Hickernell, Jared A M Bard, Kyle M Lin, Allison H Squires, Michael Ford, Tobin R Sosnick, D Allan Drummond
An adaptive biomolecular condensation response is conserved across environmentally divergent species. Nature communications 15 (1) (2024)
Samantha Keyport Kik, Dana Christopher, Hendrik Glauninger, Caitlin Wong Hickernell, Jared A M Bard, Kyle M Lin, Allison H Squires, Michael Ford, Tobin R Sosnick, D Allan Drummond
An adaptive biomolecular condensation response is conserved across environmentally divergent species. Nature communications 15 (1) (2024)
Hendrik Glauninger, Jared A M Bard, Caitlin J Wong Hickernell, Edo M Airoldi, Weihan Li, Robert H Singer, Sneha Paul, Taekjip Ha, Tobin R Sosnick, Edward W J Wallace, D Allan Drummond
Transcriptome-wide mRNA condensation precedes stress granule formation and excludes stress-induced transcripts. bioRxiv : the preprint server for biology (2024)
Hendrik Glauninger, Jared A M Bard, Caitlin J Wong Hickernell, Edo M Airoldi, Weihan Li, Robert H Singer, Sneha Paul, Taekjip Ha, Tobin R Sosnick, Edward W J Wallace, D Allan Drummond
Transcriptome-wide mRNA condensation precedes stress granule formation and excludes stress-induced transcripts. bioRxiv : the preprint server for biology (2024)
Alex Kentsis, Tobin R Sosnick
Correction to "Trifluoroethanol Promotes Helix Formation by Destabilizing Backbone Exposure: Desolvation Rather than Native Hydrogen Bonding Defines the Kinetic Pathway of Dimeric Coiled Coil Folding". Biochemistry 63 (17) (2024)
Hendrik Glauninger, Jared A M Bard, Caitlin J Wong Hickernell, Edo M Airoldi, Weihan Li, Robert H Singer, Sneha Paul, Taekjip Ha, Tobin R Sosnick, Edward W J Wallace, D Allan Drummond
Transcriptome-wide mRNA condensation precedes stress granule formation and excludes stress-induced transcripts. bioRxiv : the preprint server for biology (2024)
Ning Zhang, Damini Sood, Spencer C Guo, Nanhao Chen, Adam Antoszewski, Tegan Marianchuk, Archana Chavan, Supratim Dey, Yunxian Xiao, Lu Hong, Xiangda Peng, Michael Baxa, Carrie Partch, Lee-Ping Wang, Tobin R Sosnick, Aaron R Dinner, Andy LiWang
Temperature-Dependent Fold-Switching Mechanism of the Circadian Clock Protein KaiB. bioRxiv : the preprint server for biology (2024)
Hendrik Glauninger, Jared A M Bard, Caitlin J Wong Hickernell, Edo M Airoldi, Weihan Li, Robert H Singer, Sneha Paul, Taekjip Ha, Tobin R Sosnick, Edward W J Wallace, D Allan Drummond
Transcriptome-wide mRNA condensation precedes stress granule formation and excludes stress-induced transcripts. bioRxiv : the preprint server for biology (2024)
Samantha Keyport Kik, Dana Christopher, Hendrik Glauninger, Caitlin Wong Hickernell, Jared A M Bard, Kyle M Lin, Allison H Squires, Michael Ford, Tobin R Sosnick, D Allan Drummond
An adaptive biomolecular condensation response is conserved across environmentally divergent species. Nature communications 15 (1) (2024)
Hendrik Glauninger, Jared A M Bard, Caitlin J Wong Hickernell, Edo M Airoldi, Weihan Li, Robert H Singer, Sneha Paul, Taekjip Ha, Tobin R Sosnick, Edward W J Wallace, D Allan Drummond
Transcriptome-wide mRNA condensation precedes stress granule formation and excludes stress-induced transcripts. bioRxiv : the preprint server for biology (2024)
Nabil F Faruk, Xiangda Peng, Tobin R Sosnick
Factors That Control the Force Needed to Unfold a Membrane Protein in Silico Depend on the Mode of Denaturation. International journal of molecular sciences 24 (3) (2023)
Xiaoxuan Lin, Patrick Haller, Navid Bavi, Nabil F Faruk, Eduardo Perozo, Tobin R Sosnick
Folding of Prestin's Anion-Binding Site and the Mechanism of Outer Hair Cell Electromotility. bioRxiv : the preprint server for biology (2023)
Nabil F Faruk, Xiangda Peng, Tobin R Sosnick
Factors That Control the Force Needed to Unfold a Membrane Protein in Silico Depend on the Mode of Denaturation. International journal of molecular sciences 24 (3) (2023)
Kourtney L Kroll, Alexander R French, Tobin R Sosnick, Ronald S Rock
LILAC: enhanced actin imaging with an optogenetic Lifeact. Nature methods 20 (2) (2023)
Kourtney L Kroll, Alexander R French, Tobin R Sosnick, Ronald S Rock
LILAC: enhanced actin imaging with an optogenetic Lifeact. Nature methods (2023)
Samantha Keyport Kik, Dana Christopher, Hendrik Glauninger, Caitlin Wong Hickernell, Jared A M Bard, Michael Ford, Tobin R Sosnick, D Allan Drummond
An adaptive biomolecular condensation response is conserved across environmentally divergent species. bioRxiv : the preprint server for biology (2023)
Kourtney L Kroll, Alexander R French, Tobin R Sosnick, Ronald S Rock
LILAC: enhanced actin imaging with an optogenetic Lifeact. Nature methods 20 (2) (2023)
Xiaoxuan Lin, Patrick R Haller, Navid Bavi, Nabil Faruk, Eduardo Perozo, Tobin R Sosnick
Folding of prestin's anion-binding site and the mechanism of outer hair cell electromotility. eLife 12 (2023)
Kourtney L Kroll, Alexander R French, Tobin R Sosnick, Ronald S Rock
LILAC: enhanced actin imaging with an optogenetic Lifeact. Nature methods 20 (2) (2023)
Nabil F Faruk, Xiangda Peng, Tobin R Sosnick
Factors That Control the Force Needed to Unfold a Membrane Protein in Silico Depend on the Mode of Denaturation. International journal of molecular sciences 24 (3) (2023)
Kourtney L Kroll, Alexander R French, Tobin R Sosnick, Ronald S Rock
LILAC: enhanced actin imaging with an optogenetic Lifeact. Nature methods 20 (2) (2023)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Kristen A Gaffney, Ruiqiong Guo, Michael D Bridges, Shaima Muhammednazaar, Daoyang Chen, Miyeon Kim, Zhongyu Yang, Anthony L Schilmiller, Nabil F Faruk, Xiangda Peng, Arthur Daniel Jones, Kelly H Kim, Liangliang Sun, Wayne L Hubbell, Tobin R Sosnick, Kristen A Gaffney
Lipid bilayer induces contraction of the denatured state ensemble of a helical-bundle membrane protein. Proceedings of the National Academy of Sciences of the United States of America 119 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Xiaoxuan Lin, Adam M Zmyslowski, Isabelle A Gagnon, Robert K Nakamoto, Tobin R Sosnick
Development of in vivo HDX-MS with applications to a TonB-dependent transporter and other proteins. Protein science : a publication of the Protein Society 31 (9) (2022)
Nabil F Faruk, Xiangda Peng, Karl F Freed, Benoı T Roux, Tobin R Sosnick
Challenges and Advantages of Accounting for Backbone Flexibility in Prediction of Protein-Protein Complexes. Journal of chemical theory and computation 18 (3) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Adam M Zmyslowski, Michael C Baxa, Isabelle A Gagnon, Tobin R Sosnick
HDX-MS performed on BtuB in E. coli outer membranes delineates the luminal domain's allostery and unfolding upon B12 and TonB binding. Proceedings of the National Academy of Sciences of the United States of America 119 (20) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Xiangda Peng, Michael Baxa, Nabil Faruk, Joseph R Sachleben, Sebastian Pintscher, Isabelle A Gagnon, Scott Houliston, Cheryl H Arrowsmith, Karl F Freed, Gabriel J Rocklin, Tobin R Sosnick
Prediction and Validation of a Protein's Free Energy Surface Using Hydrogen Exchange and (Importantly) Its Denaturant Dependence. Journal of chemical theory and computation 18 (1) (2021)
Kevin C Song, Andrew V Molina, Ruofan Chen, Isabelle A Gagnon, Young Hoon Koh, Benoı T Roux, Tobin R Sosnick
Folding and misfolding of potassium channel monomers during assembly and tetramerization. Proceedings of the National Academy of Sciences of the United States of America 118 (34) (2021)
Micayla A Bowman, Joshua A Riback, Anabel Rodriguez, Hongyu Guo, Jun Li, Tobin R Sosnick, Patricia L Clark
Properties of protein unfolded states suggest broad selection for expanded conformational ensembles. Proceedings of the National Academy of Sciences of the United States of America 117 (38) (2020)
Joshua A Riback, Micayla A Bowman, Adam M Zmyslowski, Kevin William Plaxco, Patricia L Clark, Tobin R Sosnick
Commonly used FRET fluorophores promote collapse of an otherwise disordered protein. Proceedings of the National Academy of Sciences of the United States of America 116 (18) (2019)
Joshua A Riback, Micayla A Bowman, Adam M Zmyslowski, Catherine R Knoverek, John M Jumper, Emily B Kaye, Karl F Freed, Patricia L Clark, Tobin R Sosnick
Response to Comment on "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water". Science (New York, N.Y.) 361 (6405) (2018)
Joshua A Riback, Micayla A Bowman, Adam M Zmyslowski, Catherine R Knoverek, John M Jumper, James R Hinshaw, Emily B Kaye, Karl F Freed, Patricia L Clark, Tobin R Sosnick
Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water. Science (New York, N.Y.) 358 (6360) (2018)
John M Jumper, Nabil F Faruk, Karl F Freed, Tobin R Sosnick
Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics. PLoS computational biology 14 (12) (2018)
John M Jumper, Nabil F Faruk, Karl F Freed, Tobin R Sosnick
Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours. PLoS computational biology 14 (12) (2018)