Aidong Zhang

Publication Activity (10 Years)

Years Active: 2024-2024
Publications (10 Years): 17

Top Topics

Acute Lymphoblastic Leukemia

Convolutional Neural Network

Prostate Cancer

Top Venues

NAR genomics and bioinformatics

Bioengineering (Basel, Switzerland)

Bioinformatics (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Hyun Jae Cho, Zhenjia Wang, Yidan Cong, Stefan Bekiranov, Aidong Zhang, Chongzhi Zang
DARDN: A Deep-Learning Approach for CTCF Binding Sequence Classification and Oncogenic Regulatory Feature Discovery. Genes 15 (2) (2024)
Hyun Jae Cho, Zhenjia Wang, Yidan Cong, Stefan Bekiranov, Aidong Zhang, Chongzhi Zang
DARDN: A Deep-Learning Approach for CTCF Binding Sequence Classification and Oncogenic Regulatory Feature Discovery. Genes 15 (2) (2024)
Erfaneh Gharavi, Nathan J LeRoy, Guangtao Zheng, Aidong Zhang, Donald E Brown, Nathan C Sheffield
Joint Representation Learning for Retrieval and Annotation of Genomic Interval Sets. Bioengineering (Basel, Switzerland) 11 (3) (2024)
Hyun Jae Cho, Zhenjia Wang, Yidan Cong, Stefan Bekiranov, Aidong Zhang, Chongzhi Zang
DARDN: A Deep-Learning Approach for CTCF Binding Sequence Classification and Oncogenic Regulatory Feature Discovery. Genes 15 (2) (2024)
Guangzhi Xiong, Nathan J LeRoy, Stefan Bekiranov, Nathan C Sheffield, Aidong Zhang
DeepGSEA: explainable deep gene set enrichment analysis for single-cell transcriptomic data. Bioinformatics (Oxford, England) 40 (7) (2024)
Guangtao Zheng, Julia Rymuza, Erfaneh Gharavi, Nathan J LeRoy, Aidong Zhang, Nathan C Sheffield
Methods for evaluating unsupervised vector representations of genomic regions. NAR genomics and bioinformatics 6 (3) (2024)
Hyun Jae Cho, Zhenjia Wang, Yidan Cong, Stefan Bekiranov, Aidong Zhang, Chongzhi Zang
DARDN: A Deep-Learning Approach for CTCF Binding Sequence Classification and Oncogenic Regulatory Feature Discovery. Genes 15 (2) (2024)
Nathan J LeRoy, Jason P Smith, Guangtao Zheng, Julia Rymuza, Erfaneh Gharavi, Donald E Brown, Aidong Zhang, Nathan C Sheffield
Fast clustering and cell-type annotation of scATAC data using pre-trained embeddings. NAR genomics and bioinformatics 6 (3) (2024)
Erfaneh Gharavi, Nathan J LeRoy, Guangtao Zheng, Aidong Zhang, Donald E Brown, Nathan C Sheffield
Joint Representation Learning for Retrieval and Annotation of Genomic Interval Sets. Bioengineering (Basel, Switzerland) 11 (3) (2024)
Guangtao Zheng, Julia Rymuza, Erfaneh Gharavi, Nathan J LeRoy, Aidong Zhang, Nathan C Sheffield
Methods for evaluating unsupervised vector representations of genomic regions. NAR genomics and bioinformatics 6 (3) (2024)
Erfaneh Gharavi, Nathan J LeRoy, Guangtao Zheng, Aidong Zhang, Donald E Brown, Nathan C Sheffield
Joint Representation Learning for Retrieval and Annotation of Genomic Interval Sets. Bioengineering (Basel, Switzerland) 11 (3) (2024)
Erfaneh Gharavi, Nathan J LeRoy, Guangtao Zheng, Aidong Zhang, Donald E Brown, Nathan C Sheffield
Joint Representation Learning for Retrieval and Annotation of Genomic Interval Sets. Bioengineering (Basel, Switzerland) 11 (3) (2024)
Julia Rymuza, Yuchen Sun, Guangtao Zheng, Nathan J LeRoy, Maria Murach, Neil Phan, Aidong Zhang, Nathan C Sheffield
Methods for constructing and evaluating consensus genomic interval sets. Nucleic acids research (2024)
Nathan J LeRoy, Jason P Smith, Guangtao Zheng, Julia Rymuza, Erfaneh Gharavi, Donald E Brown, Aidong Zhang, Nathan C Sheffield
Fast clustering and cell-type annotation of scATAC data using pre-trained embeddings. NAR genomics and bioinformatics 6 (3) (2024)
Hyun Jae Cho, Zhenjia Wang, Yidan Cong, Stefan Bekiranov, Aidong Zhang, Chongzhi Zang
DARDN: A Deep-Learning Approach for CTCF Binding Sequence Classification and Oncogenic Regulatory Feature Discovery. Genes 15 (2) (2024)
Guangzhi Xiong, Nathan J LeRoy, Stefan Bekiranov, Nathan C Sheffield, Aidong Zhang
DeepGSEA: explainable deep gene set enrichment analysis for single-cell transcriptomic data. Bioinformatics (Oxford, England) 40 (7) (2024)
Guangtao Zheng, Julia Rymuza, Erfaneh Gharavi, Nathan J LeRoy, Aidong Zhang, Nathan C Sheffield
Methods for evaluating unsupervised vector representations of genomic regions. NAR genomics and bioinformatics 6 (3) (2024)