Chongzhi Zang

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 42

Top Venues

Nature immunology

Genes

Nucleic acids research

eLife

University of Virginia

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Virginia Nov 01 2016

United States

Assistant Professor :: Center for Public Health Genomics

Publications

Mengxue Tian, Zhenjia Wang, Zhangli Su, Etsuko Shibata, Yoshiyuki Shibata, Anindya Dutta, Chongzhi Zang
Integrative analysis of DNA replication origins and ORC-/MCM-binding sites in human cells reveals a lack of overlap. eLife 12 (2024)
Xin Zhao, Wei Hu, Sung Rye Park, Shaoqi Zhu, Sheng'en Shawn Hu, Chongzhi Zang, Weiqun Peng, Qiang Shan, Hai-Hui Xue
The transcriptional cofactor Tle3 reciprocally controls effector and central memory CD8 + T cell fates. Nature immunology 25 (2) (2024)
Hyun Jae Cho, Zhenjia Wang, Yidan Cong, Stefan Bekiranov, Aidong Zhang, Chongzhi Zang
DARDN: A Deep-Learning Approach for CTCF Binding Sequence Classification and Oncogenic Regulatory Feature Discovery. Genes 15 (2) (2024)
Hyun Jae Cho, Zhenjia Wang, Yidan Cong, Stefan Bekiranov, Aidong Zhang, Chongzhi Zang
DARDN: A Deep-Learning Approach for CTCF Binding Sequence Classification and Oncogenic Regulatory Feature Discovery. Genes 15 (2) (2024)
Hyun Jae Cho, Zhenjia Wang, Yidan Cong, Stefan Bekiranov, Aidong Zhang, Chongzhi Zang
DARDN: A Deep-Learning Approach for CTCF Binding Sequence Classification and Oncogenic Regulatory Feature Discovery. Genes 15 (2) (2024)
Mengxue Tian, Zhenjia Wang, Zhangli Su, Etsuko Shibata, Yoshiyuki Shibata, Anindya Dutta, Chongzhi Zang
Integrative analysis of DNA replication origins and ORC-/MCM-binding sites in human cells reveals a lack of overlap. eLife 12 (2024)
Xin Zhao, Wei Hu, Sung Rye Park, Shaoqi Zhu, Sheng'en Shawn Hu, Chongzhi Zang, Weiqun Peng, Qiang Shan, Hai-Hui Xue
The transcriptional cofactor Tle3 reciprocally controls effector and central memory CD8 + T cell fates. Nature immunology (2024)
Xin Zhao, Wei Hu, Sung Rye Park, Shaoqi Zhu, Sheng'en Shawn Hu, Chongzhi Zang, Weiqun Peng, Qiang Shan, Hai-Hui Xue
The transcriptional cofactor Tle3 reciprocally controls effector and central memory CD8 + T cell fates. Nature immunology 25 (2) (2024)
Heather M Raimer Young, Pei-Chi Hou, Anna R Bartosik, Naomi D Atkin, Lixin Wang, Zhenjia Wang, Aakrosh Ratan, Chongzhi Zang, Yuh-Hwa Wang
DNA fragility at topologically associated domain boundaries is promoted by alternative DNA secondary structure and topoisomerase II activity. Nucleic acids research 52 (7) (2024)
Xin Zhao, Wei Hu, Sung Rye Park, Shaoqi Zhu, Sheng'en Shawn Hu, Chongzhi Zang, Weiqun Peng, Qiang Shan, Hai-Hui Xue
The transcriptional cofactor Tle3 reciprocally controls effector and central memory CD8 + T cell fates. Nature immunology 25 (2) (2024)
Xin Zhao, Wei Hu, Sung Rye Park, Shaoqi Zhu, Sheng'en Shawn Hu, Chongzhi Zang, Weiqun Peng, Qiang Shan, Hai-Hui Xue
The transcriptional cofactor Tle3 reciprocally controls effector and central memory CD8 + T cell fates. Nature immunology 25 (2) (2024)
Xin Zhao, Wei Hu, Sung Rye Park, Shaoqi Zhu, Sheng'en Shawn Hu, Chongzhi Zang, Weiqun Peng, Qiang Shan, Hai-Hui Xue
The transcriptional cofactor Tle3 reciprocally controls effector and central memory CD8 + T cell fates. Nature immunology 25 (2) (2024)
Xin Zhao, Wei Hu, Sung Rye Park, Shaoqi Zhu, Sheng'en Shawn Hu, Chongzhi Zang, Weiqun Peng, Qiang Shan, Hai-Hui Xue
The transcriptional cofactor Tle3 reciprocally controls effector and central memory CD8 + T cell fates. Nature immunology 25 (2) (2024)
Xin Zhao, Wei Hu, Sung Rye Park, Shaoqi Zhu, Sheng'en Shawn Hu, Chongzhi Zang, Weiqun Peng, Qiang Shan, Hai-Hui Xue
The transcriptional cofactor Tle3 reciprocally controls effector and central memory CD8 + T cell fates. Nature immunology 25 (2) (2024)
Harish Narasimhan, In Su Cheon, Wei Qian, Sheng'en Shawn Hu, Tanyalak Parimon, Chaofan Li, Nicholas P Goplen, Yue Wu, Xiaoqin Wei, Young Min Son, Elizabeth Fink, Gislane de Almeida Santos, Jinyi Tang, Changfu Yao, Lyndsey M Muehling, Glenda Canderan, Alexandra Kadl, Abigail Cannon, Samuel Young, Riley Hannan, Grace Bingham, Mohammed Arish, Arka Sen Chaudhari, Jun Sub Im, Cameron L R Mattingly, Patcharin Pramoonjago, Alberto Marchesvsky, Jeffrey M Sturek, Jacob E Kohlmeier, Yun Michael Shim, Judith Woodfolk, Chongzhi Zang, Peter Chen, Jie Sun
An aberrant immune-epithelial progenitor niche drives viral lung sequelae. Nature (2024)
Xin Zhao, Wei Hu, Sung Rye Park, Shaoqi Zhu, Sheng'en Shawn Hu, Chongzhi Zang, Weiqun Peng, Qiang Shan, Hai-Hui Xue
The transcriptional cofactor Tle3 reciprocally controls effector and central memory CD8 + T cell fates. Nature immunology 25 (2) (2024)
Mengxue Tian, Zhenjia Wang, Zhangli Su, Etsuko Shibata, Yoshiyuki Shibata, Anindya Dutta, Chongzhi Zang
Integrative analysis of DNA replication origins and ORC-/MCM-binding sites in human cells reveals a lack of overlap. eLife 12 (2024)
Hyun Jae Cho, Zhenjia Wang, Yidan Cong, Stefan Bekiranov, Aidong Zhang, Chongzhi Zang
DARDN: A Deep-Learning Approach for CTCF Binding Sequence Classification and Oncogenic Regulatory Feature Discovery. Genes 15 (2) (2024)
Heather M Raimer Young, Pei-Chi Hou, Anna R Bartosik, Naomi D Atkin, Lixin Wang, Zhenjia Wang, Aakrosh Ratan, Chongzhi Zang, Yuh-Hwa Wang
DNA fragility at topologically associated domain boundaries is promoted by alternative DNA secondary structure and topoisomerase II activity. Nucleic acids research 52 (7) (2024)
Mengxue Tian, Zhenjia Wang, Zhangli Su, Etsuko Shibata, Yoshiyuki Shibata, Anindya Dutta, Chongzhi Zang
Integrative analysis of DNA replication origins and ORC-/MCM-binding sites in human cells reveals a lack of overlap. eLife 12 (2024)
Xin Zhao, Wei Hu, Sung Rye Park, Shaoqi Zhu, Sheng'en Shawn Hu, Chongzhi Zang, Weiqun Peng, Qiang Shan, Hai-Hui Xue
The transcriptional cofactor Tle3 reciprocally controls effector and central memory CD8 + T cell fates. Nature immunology 25 (2) (2024)
Heather M Raimer Young, Pei-Chi Hou, Anna R Bartosik, Naomi D Atkin, Lixin Wang, Zhenjia Wang, Aakrosh Ratan, Chongzhi Zang, Yuh-Hwa Wang
DNA fragility at topologically associated domain boundaries is promoted by alternative DNA secondary structure and topoisomerase II activity. Nucleic acids research 52 (7) (2024)
Heather M Raimer Young, Pei-Chi Hou, Anna R Bartosik, Naomi D Atkin, Lixin Wang, Zhenjia Wang, Aakrosh Ratan, Chongzhi Zang, Yuh-Hwa Wang
DNA fragility at topologically associated domain boundaries is promoted by alternative DNA secondary structure and topoisomerase II activity. Nucleic acids research (2024)
Xin Zhao, Wei Hu, Sung Rye Park, Shaoqi Zhu, Sheng'en Shawn Hu, Chongzhi Zang, Weiqun Peng, Qiang Shan, Hai-Hui Xue
The transcriptional cofactor Tle3 reciprocally controls effector and central memory CD8 + T cell fates. Nature immunology 25 (2) (2024)
Xin Zhao, Wei Hu, Sung Rye Park, Shaoqi Zhu, Sheng'en Shawn Hu, Chongzhi Zang, Weiqun Peng, Qiang Shan, Hai-Hui Xue
Publisher Correction: The transcriptional cofactor Tle3 reciprocally controls effector and central memory CD8 + T cell fates. Nature immunology (2024)
Hyun Jae Cho, Zhenjia Wang, Yidan Cong, Stefan Bekiranov, Aidong Zhang, Chongzhi Zang
DARDN: A Deep-Learning Approach for CTCF Binding Sequence Classification and Oncogenic Regulatory Feature Discovery. Genes 15 (2) (2024)
Heather M Raimer Young, Pei-Chi Hou, Anna R Bartosik, Naomi D Atkin, Lixin Wang, Zhenjia Wang, Aakrosh Ratan, Chongzhi Zang, Yuh-Hwa Wang
DNA fragility at topologically associated domain boundaries is promoted by alternative DNA secondary structure and topoisomerase II activity. Nucleic acids research (2024)
Manikarna Dinda, Ryan D Fine, Shekhar Saha, Zhenjia Wang, Chongzhi Zang, Mingguang Li, Jeffrey S Smith
Fob1-dependent condensin recruitment and loop extrusion on yeast chromosome III. PLoS genetics 19 (4) (2023)
Harish Narasimhan, In Su Cheon, Wei Qian, Sheng'en Hu, Tanyalak Parimon, Chaofan Li, Nick Goplen, Yue Wu, Xiaoqin Wei, Young Min Son, Elizabeth Fink, Gislane Santos, Jinyi Tang, Changfu Yao, Lyndsey Muehling, Glenda Canderan, Alexandra Kadl, Abigail Cannon, Patcharin Pramoonjago, Yun Michael Shim, Judith Woodfolk, Chongzhi Zang, Peter Chen, Jie Sun
Proximal immune-epithelial progenitor interactions drive chronic tissue sequelae post COVID-19. bioRxiv : the preprint server for biology (2023)
Jie Sun, Harish Narasimhan, In Su Cheon, Wei Qian, Shengen Hu, Tanyalak Parimon, Chaofan Li, Nicholas P Goplen, Yue Wu, Xiaoqin Wei, Young Min Son, Elizabeth Fink, Gislane Santos, Jinyi Tang, Changfu Yao, Lyndsey Muehling, Glenda Canderan, Alexandra Kadl, Abigail Cannon, Samuel Young, Riley Hannan, Grace Bingham, Mohammad Arish, Arka Sen Chaudhari, Jeffrey Sturek, Patcharin Pramoonjago, Yun Shim, Judith Woodfolk, Chongzhi Zang, Peter Chen
Proximal immune-epithelial progenitor interactions drive chronic tissue sequelae post COVID-19. Research square (2023)
Sheng'en Shawn Hu, Lin Liu, Qi Li, Wenjing Ma, Michael J Guertin, Clifford A Meyer, Ke Deng, Tingting Zhang, Chongzhi Zang
Intrinsic bias estimation for improved analysis of bulk and single-cell chromatin accessibility profiles using SELMA. Nature communications 13 (1) (2022)
Ryan J Smith, Hongpan Zhang, Sheng'en Shawn Hu, Theodora M Yung, Roshane Francis, Lilian Lee, Mark W Onaitis, Peter B Dirks, Chongzhi Zang, Tae-Hee Kim
Single-cell chromatin profiling of the primitive gut tube reveals regulatory dynamics underlying lineage fate decisions. Nature communications 13 (1) (2022)
Qiang Shan, Sheng'en Shawn Hu, Shaoqi Zhu, Xia Chen, Vladimir P Badovinac, Weiqun Peng, Chongzhi Zang, Hai-Hui Xue
Tcf1 preprograms the mobilization of glycolysis in central memory CD8 + T cells during recall responses. Nature immunology 23 (3) (2022)
Adam W Turner, Sheng'en Shawn Hu, Jose Verdezoto Mosquera, Wei Feng Ma, Chani J Hodonsky, Doris Wong, Gaëlle Auguste, Yipei Song, Katia Sol-Church, Emily Farber, Soumya Kundu, Anshul Kundaje, Nicolas G Lopez, Lijiang Ma, Saikat Kumar B Ghosh, Suna Onngut-Gumuscu, Euan A Ashley, Thomas Quertermous, Aloke V Finn, Nicholas J Leeper, Jason C Kovacic, Johan L M Bjorkegren, Chongzhi Zang, Clint T Miller
Single-nucleus chromatin accessibility profiling highlights regulatory mechanisms of coronary artery disease risk. Nature genetics 54 (6) (2022)
Avik Dutta, Dipmoy Nath, Yue Yang, Bao T Le, Mohammad Ferdous-Ur Rahman, Patrick Faughnan, Zhenjia Wang, Matthew Stuver, Rongquan He, Wuwei Tan, Robert E Hutchison, Jason M Foulks, Steven L Warner, Chongzhi Zang, Golam Mohi
Genetic ablation of Pim1 or pharmacologic inhibition with TP-3654 ameliorates myelofibrosis in murine models. Leukemia (2021)
Wenjing Ma, Zhenjia Wang, Yifan Zhang, Neal E Magee, Yayi Feng, Ruoyao Shi, Yang Chen, Chongzhi Zang
BARTweb: a web server for transcriptional regulator association analysis. NAR genomics and bioinformatics 3 (2) (2021)
Zachary V Thomas, Zhenjia Wang, Chongzhi Zang
BART Cancer: a web resource for transcriptional regulators in cancer genomes. NAR cancer 3 (1) (2021)
Celestia Fang, Zhenjia Wang, Cuijuan Han, Stephanie L Safgren, Kathryn A Helmin, Emmalee R Adelman, Valentina Serafin, Giuseppe Basso, Kyle P Eagen, Alexandre Gaspar-Maia, Maria E Figueroa, Benjamin D Singer, Aakrosh Ratan, Panagiotis Ntziachristos, Chongzhi Zang
Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation. Genome biology 21 (1) (2020)
Jing Zhang, Donghoon Lee, Vineet Dhiman, Peng Jiang, Jie Xu, Patrick McGillivray, Hongbo Yang, Jason Liu, William Meyerson, Declan Clarke, Mengting Gu, Shantao Li, Shaoke Lou, Jinrui Xu, Lucas Lochovsky, Matthew Ung, Lijia Ma, Shan Yu, Qin Cao, Arif O Harmanci, Koon-Kiu Yan, Anurag Sethi, Gamze Gürsoy, Michael Rutenberg Schoenberg, Joel Rozowsky, Jonathan Warrell, Prashant Emani, Yucheng T Yang, Timur Galeev, Xiangmeng Kong, Shuang Liu, Xiaotong Li, Jayanth Krishnan, Yanlin Feng, Juan Carlos Rivera-Mulia, Jessica Adrian, James R Broach, Michael Bolt, Jennifer Moran, Dominic Fitzgerald, Vishnu Dileep, Tingting Liu, Shenglin Mei, Takayo Sasaki, Claudia Trevilla-Garcia, Su Wang, Yanli Wang, Chongzhi Zang, Daifeng Wang, Robert J Klein, Michael Paul Snyder, David M Gilbert, Kevin Y Yip, Chao Cheng, Feng Yue, X Shirley Liu, Kevin P White, Mark B Gerstein
An integrative ENCODE resource for cancer genomics. Nature communications 11 (1) (2020)
Qiang Shan, Sheng'en Hu, Xia Chen, Derek B Danahy, Vladimir P Badovinac, Chongzhi Zang, Hai-Hui Xue
Ectopic Tcf1 expression instills a stem-like program in exhausted CD8+ T cells to enhance viral and tumor immunity. Cellular & molecular immunology 18 (5) (2020)
Cynthia C Jose, Lakshmanan Jagannathan, Vinay S Tanwar, Xiaoru Zhang, Chongzhi Zang, Suresh Cuddapah
Nickel exposure induces persistent mesenchymal phenotype in human lung epithelial cells through epigenetic activation of ZEB1. Molecular carcinogenesis 57 (6) (2018)
Eric A Severson, Kelly L Arnett, Hongfang Wang, Chongzhi Zang, Len Taing, Hudan Liu, Warren S Pear, X Shirley Liu, Stephen C Blacklow, Jon C Aster
Genome-wide identification and characterization of Notch transcription complex-binding sequence-paired sites in leukemia cells. Science signaling 10 (477) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Chongzhi Zang