Alan J Wolfe (A J Wolfe)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 61

Top Topics

Histone Deacetylase

Escherichia Coli

Genetic Diversity

Top Venues

Microbiology resource announcements

Microbiology spectrum

This page only lists publications with an associated author ORCID identifier.

Publications

Helen Appleberry, Richa Patel, Kanishka Singh, Alan J Wolfe, Catherine Putonti, Alex Kula
Draft genomes of two Enterobacter hormaechei strains isolated from catheterized urine samples from females experiencing overactive bladder symptoms. Microbiology resource announcements 13 (8) (2024)
Jyoti Lamichhane, Brian I Choi, Natalie Stegman, Melline Fontes Noronha, Alan J Wolfe
Macrolide Resistance in the Aerococcus urinae Complex: Implications for Integrative and Conjugative Elements. Antibiotics (Basel, Switzerland) 13 (5) (2024)
Jingjie Du, Mark Khemmani, Thomas Halverson, Adriana Ene, Roberto Limeira, Lana Tinawi, Baylie R Hochstedler-Kramer, Melline Fontes Noronha, Catherine Putonti, Alan J Wolfe
Cataloging the phylogenetic diversity of human bladder bacterial isolates. Genome biology 25 (1) (2024)
Jingjie Du, Mark Khemmani, Thomas Halverson, Adriana Ene, Roberto Limeira, Lana Tinawi, Baylie R Hochstedler-Kramer, Melline Fontes Noronha, Catherine Putonti, Alan J Wolfe
Cataloging the phylogenetic diversity of human bladder bacterial isolates. Genome biology 25 (1) (2024)
Alex Kula, Grace Chilton, James Damaso, Yusef Golzar, Fatima Rushnaiwala, Helen Appleberry, Alan J Wolfe, Catherine Putonti
Draft genome sequences of four Corynebacterium amycolatum strains isolated from female urine samples. Microbiology resource announcements (2024)
Hanna E Walukiewicz, Yuliya Farris, Meagan C Burnet, Sarah C Feid, Youngki You, Hyeyoon Kim, Thomas Bank, David G Christensen, Samuel H Payne, Alan J Wolfe, Christopher V Rao, Ernesto S Nakayasu
Regulation of bacterial stringent response by an evolutionarily conserved ribosomal protein L11 methylation. mBio (2024)
Helen Appleberry, Warwick Price, Lorenzo Roque, Evelyn Umana, Alan J Wolfe, Catherine Putonti, Alex Kula
Draft genome assemblies of three Klebsiella grimontii strains isolated from catheterized urine samples from the same male participant over the course of 6 months. Microbiology resource announcements 13 (8) (2024)
Brian I Choi, Melline Fontes Noronha, Jacob Kaindl, Alan J Wolfe
Complete genome sequences of Aerococcus loyolae ATCC TSD-300 T , Aerococcus mictus ATCC TSD-301 T , and Aerococcus tenax ATCC TSD-302 T . Microbiology resource announcements 13 (6) (2024)
Helen Appleberry, Richa Patel, Kanishka Singh, Alan J Wolfe, Catherine Putonti, Alex Kula
Draft genomes of two Enterobacter hormaechei strains isolated from catheterized urine samples from females experiencing overactive bladder symptoms. Microbiology resource announcements (2024)
Jingjie Du, Mark Khemmani, Thomas Halverson, Adriana Ene, Roberto Limeira, Lana Tinawi, Baylie R Hochstedler-Kramer, Melline Fontes Noronha, Catherine Putonti, Alan J Wolfe
Cataloging the phylogenetic diversity of human bladder bacterial isolates. Genome biology 25 (1) (2024)
Helen Appleberry, Warwick Price, Lorenzo Roque, Evelyn Umana, Alan J Wolfe, Catherine Putonti, Alex Kula
Draft genome assemblies of three Klebsiella grimontii strains isolated from catheterized urine samples from the same male participant over the course of 6 months. Microbiology resource announcements (2024)
Wilson Geaman, Brian I Choi, Jacob Kaindl, Caroline Gonzalez, Alan J Wolfe
Microbroth dilution method for antibiotic susceptibility testing of fastidious and anaerobic bacteria of the urinary microbiome. Microbiology spectrum 12 (6) (2024)
Helen Appleberry, Warwick Price, Lorenzo Roque, Evelyn Umana, Alan J Wolfe, Catherine Putonti, Alex Kula
Draft genome assemblies of three Klebsiella grimontii strains isolated from catheterized urine samples from the same male participant over the course of 6 months. Microbiology resource announcements 13 (8) (2024)
Helen Appleberry, Haaris Anjum, Taleah Cage, Kayla Jarm, Haashir Khan, Lizzie Proctor, Junelle Saroca, Alan J Wolfe, Catherine Putonti, Alex Kula
Draft genomes of one Staphylococcus haemolyticus and five Staphylococcus lugdunensis strains isolated from catheterized urine samples of females. Microbiology resource announcements (2024)
Helen Appleberry, Michaela Brady, Samantha Webster, Alan J Wolfe, Catherine Putonti, Alex Kula
Draft genome sequences of an Enterobacter hormaechei and Providencia rettgeri isolated from the urine of a male experiencing a catheter-associated urinary tract infection. Microbiology resource announcements (2024)
Alex Kula, Ali Khan, Megan Martinez, Jevan Terry, Helen Appleberry, Alan J Wolfe, Catherine Putonti
Draft genomes of Neisseria perflava UMB0578, Proteus mirabilis UMB8339, and Enterococcus faecalis UMB7967 isolated from urine samples. Microbiology resource announcements (2024)
Helen Appleberry, Warwick Price, Lorenzo Roque, Evelyn Umana, Alan J Wolfe, Catherine Putonti, Alex Kula
Draft genome assemblies of three Klebsiella grimontii strains isolated from catheterized urine samples from the same male participant over the course of 6 months. Microbiology resource announcements 13 (8) (2024)
Jingjie Du, Mark Khemmani, Thomas Halverson, Adriana Ene, Roberto Limeira, Lana Tinawi, Baylie R Hochstedler-Kramer, Melline Fontes Noronha, Catherine Putonti, Alan J Wolfe
Cataloging the phylogenetic diversity of human bladder bacterial isolates. Genome biology 25 (1) (2024)
Alex Kula, Muna Arman, Helen Appleberry, Alan J Wolfe, Catherine Putonti
Draft genomes of Klebsiella aerogenes , Klebsiella huaxiensis , and Klebsiella michiganensis isolates from the urinary tract. Microbiology resource announcements (2024)
Helen Appleberry, Richa Patel, Kanishka Singh, Alan J Wolfe, Catherine Putonti, Alex Kula
Draft genomes of two Enterobacter hormaechei strains isolated from catheterized urine samples from females experiencing overactive bladder symptoms. Microbiology resource announcements 13 (8) (2024)
Brian I Choi, Melline Fontes Noronha, Jacob Kaindl, Alan J Wolfe
Complete genome sequences of Aerococcus loyolae ATCC TSD-300 T , Aerococcus mictus ATCC TSD-301 T , and Aerococcus tenax ATCC TSD-302 T . Microbiology resource announcements (2024)
Brian I Choi, Melline Fontes Noronha, Jacob Kaindl, Alan J Wolfe
Complete genome sequences of Aerococcus loyolae ATCC TSD-300 T , Aerococcus mictus ATCC TSD-301 T , and Aerococcus tenax ATCC TSD-302 T . Microbiology resource announcements 13 (6) (2024)
Wilson Geaman, Brian I Choi, Jacob Kaindl, Caroline Gonzalez, Alan J Wolfe
Microbroth dilution method for antibiotic susceptibility testing of fastidious and anaerobic bacteria of the urinary microbiome. Microbiology spectrum 12 (6) (2024)
Jingjie Du, Mark Khemmani, Thomas Halverson, Adriana Ene, Roberto Limeira, Lana Tinawi, Baylie R Hochstedler-Kramer, Melline Fontes Noronha, Catherine Putonti, Alan J Wolfe
Cataloging the phylogenetic diversity of human bladder bacterial isolates. Genome biology 25 (1) (2024)
Jingjie Du, Mark Khemmani, Thomas Halverson, Adriana Ene, Roberto Limeira, Lana Tinawi, Baylie R Hochstedler-Kramer, Melline Fontes Noronha, Catherine Putonti, Alan J Wolfe
Cataloging the phylogenetic diversity of human bladder bacterial isolates. Genome biology 25 (1) (2024)
Wilson Geaman, Brian I Choi, Jacob Kaindl, Caroline Gonzalez, Alan J Wolfe
Microbroth dilution method for antibiotic susceptibility testing of fastidious and anaerobic bacteria of the urinary microbiome. Microbiology spectrum (2024)
Helen Appleberry, Richa Patel, Kanishka Singh, Alan J Wolfe, Catherine Putonti, Alex Kula
Draft genomes of two Enterobacter hormaechei strains isolated from catheterized urine samples from females experiencing overactive bladder symptoms. Microbiology resource announcements 13 (8) (2024)
Brian I Choi, Melline Fontes Noronha, Jacob Kaindl, Alan J Wolfe
Complete genome sequences of Aerococcus loyolae ATCC TSD-300 T , Aerococcus mictus ATCC TSD-301 T , and Aerococcus tenax ATCC TSD-302 T . Microbiology resource announcements 13 (6) (2024)
Jyoti Lamichhane, Brian I Choi, Natalie Stegman, Melline Fontes Noronha, Alan J Wolfe
Macrolide Resistance in the Aerococcus urinae Complex: Implications for Integrative and Conjugative Elements. Antibiotics (Basel, Switzerland) 13 (5) (2024)
Adriana Ene, Swarnali Banerjee, Alan J Wolfe, Catherine Putonti
Exploring the genotypic and phenotypic differences distinguishing Lactobacillus jensenii and Lactobacillus mulieris . mSphere (2023)
Juliana Sung, Peter Larsen, Thomas M Halverson, Thaddeus P Waters, Jean R Goodman, Alan J Wolfe
First trimester "clean catch" urine and vaginal swab sample distinct microbiological niches. Microbiology spectrum (2023)
Cesar Montelongo Hernandez, Catherine Putonti, Alan J Wolfe
Urinary Plasmids Reduce Permissivity to Coliphage Infection. Microbiology spectrum (2023)
Alan J Wolfe, David J Rademacher, Carine R Mores, Robert J Evans, Tyler Overholt, Thomas Halverson, Roberto Limeira, Catherine Matthews, Gopal Badlani, Linda Brubaker, Stephen J Walker
Detection of Bacteria in Bladder Mucosa of Adult Females. The Journal of urology (2023)
Elias Crum, Zubia Merchant, Adriana Ene, Taylor Miller-Ensminger, Genevieve Johnson, Alan J Wolfe, Catherine Putonti
Coliphages of the human urinary microbiota. PloS one 18 (4) (2023)
Goran Rac, Hiten D Patel, Christopher James, Shalin Desai, Vincent M Caruso, Daniel S Fischer, Peter S Lentz, Ceressa T Ward, Brian C Mazzarella, Kevin G Phillips, Chirag Doshi, Vincent T Bicocca, Trevor G Levin, Alan J Wolfe, Gopal N Gupta
Urinary comprehensive genomic profiling predicts urothelial carcinoma recurrence and identifies responders to intravesical therapy. Molecular oncology (2023)
Ananya Prasad, Adriana Ene, Sandra Jablonska, Jingjie Du, Alan J Wolfe, Catherine Putonti
Comparative Genomic Study of Streptococcus anginosus Reveals Distinct Group of Urinary Strains. mSphere (2023)
Alan J Wolfe, David J Rademacher, Carine R Mores, Robert J Evans, Tyler Overholt, Thomas Halverson, Roberto Limeira, Catherine Matthews, Gopal Badlani, Linda Brubaker, Stephen J Walker
Detection of Bacteria in Bladder Mucosa of Adult Females. The Journal of urology (2023)
Genevieve Johnson, Seanna Bataclan, Minerva So, Swarnali Banerjee, Alan J Wolfe, Catherine Putonti
Plasmids of the urinary microbiota. Access microbiology 4 (11) (2022)
Sandra Jablonska, Alan J Wolfe, Catherine Putonti
Draft Genome Sequence of Staphylococcus epidermidis UMB7543, Isolated from a Female Patient with Recurrent Urinary Tract Infections. Microbiology resource announcements (2022)
Cesar Montelongo, Carine R Mores, Catherine Putonti, Alan J Wolfe, Alaa Abouelfetouh
Whole-Genome Sequencing of Staphylococcus aureus and Staphylococcus haemolyticus Clinical Isolates from Egypt. Microbiology spectrum 10 (4) (2022)
Genevieve Johnson, Seanna Bataclan, Minerva So, Swarnali Banerjee, Alan J Wolfe, Catherine Putonti
Plasmids of the urinary microbiota. Access microbiology 4 (11) (2022)
Thomas Halverson, Elizabeth R Mueller, Linda Brubaker, Alan J Wolfe
Symptom improvement with mirabegron treatment is associated with urobiome changes in adult women. International urogynecology journal 33 (5) (2022)
Sarah C Feid, Hanna E Walukiewicz, Xiaoyi Wang, Ernesto S Nakayasu, Christopher V Rao, Alan J Wolfe
Regulation of Translation by Lysine Acetylation in Escherichia coli. mBio 13 (3) (2022)
Genevieve Johnson, Seanna Bataclan, Minerva So, Swarnali Banerjee, Alan J Wolfe, Catherine Putonti
Plasmids of the urinary microbiota. Access microbiology 4 (11) (2022)
Thomas Halverson, Elizabeth R Mueller, Linda Brubaker, Alan J Wolfe
Urobiome changes differ based on OAB treatment in adult females. International urogynecology journal (2022)
Fengping Liu, Jingjie Du, Qixiao Zhai, Jialin Hu, Aaron W Miller, Tianli Ren, Yangkun Feng, Peng Jiang, Lei Hu, Jiayi Sheng, Chaoqun Gu, Ren Yan, Longxian Lv, Alan J Wolfe, Ninghan Feng
The Bladder Microbiome, Metabolome, Cytokines, and Phenotypes in Patients with Systemic Lupus Erythematosus. Microbiology spectrum 10 (5) (2022)
Naveen Kachroo, Dirk Lange, Kristina L Penniston, Joshua Stern, Gregory Tasian, Petar Bajic, Alan J Wolfe, Mangesh Suryavanshi, Andrea Ticinesi, Tiziana Meschi, Manoj Monga, Aaron W Miller
Standardization of microbiome studies for urolithiasis: an international consensus agreement. Nature reviews. Urology 18 (5) (2021)
Catherine Putonti, Krystal Thomas-White, Elias Crum, Evann E Hilt, Travis K Price, Alan J Wolfe
Genome Investigation of Urinary Gardnerella Strains and Their Relationship to Isolates of the Vaginal Microbiota. mSphere 6 (3) (2021)
Cesar Montelongo Hernandez, Catherine Putonti, Alan J Wolfe
Characterizing Plasmids in Bacteria Species Relevant to Urinary Health. Microbiology spectrum 9 (3) (2021)
Linda Brubaker, Catherine Putonti, Qunfeng Dong, Alan J Wolfe
The human urobiome. Mammalian genome : official journal of the International Mammalian Genome Society 32 (4) (2021)
Adriana Ene, Taylor Miller-Ensminger, Carine R Mores, Silvia Giannattasio-Ferraz, Alan J Wolfe, Alaa Abouelfetouh, Catherine Putonti
Examination of Staphylococcus aureus Prophages Circulating in Egypt. Viruses 13 (2) (2021)
Baylie R Hochstedler, Lindsey Burnett, Travis K Price, Carrie Jung, Alan J Wolfe, Linda Brubaker
Urinary microbiota of women with recurrent urinary tract infection: collection and culture methods. International urogynecology journal (2021)
Carter Hoffman, Nazema Y Siddiqui, Ian Fields, W Thomas Gregory, Holly M Simon, Michael A Mooney, Alan J Wolfe, Lisa Karstens
Species-Level Resolution of Female Bladder Microbiota from 16S rRNA Amplicon Sequencing. mSystems 6 (5) (2021)
Omar Abdul-Rahim, Qihao Wu, Travis K Price, Giuseppe Pistone, Katherine Diebel, Tim S Bugni, Alan J Wolfe
Phenyl-Lactic Acid Is an Active Ingredient in Bactericidal Supernatants of Lactobacillus crispatus. Journal of bacteriology 203 (19) (2021)
Mario Zamora, Christine A Ziegler, Peter L Freddolino, Alan J Wolfe
A Thermosensitive, Phase-Variable Epigenetic Switch: pap Revisited. Microbiology and molecular biology reviews : MMBR 84 (3) (2020)
Catherine Putonti, Jason W Shapiro, Adriana Ene, Oleksandra Tsibere, Alan J Wolfe
Comparative Genomic Study of Lactobacillus jensenii and the Newly Defined Lactobacillus mulieris Species Identifies Species-Specific Functionality. mSphere 5 (4) (2020)
Taylor Miller-Ensminger, Rita Mormando, Laura Maskeri, Jason W Shapiro, Alan J Wolfe, Catherine Putonti
Introducing Lu-1, a Novel Lactobacillus jensenii Phage Abundant in the Urogenital Tract. PloS one 15 (6) (2020)
T K Price, E E Hilt, K Thomas-White, E R Mueller, Alan J Wolfe, L Brubaker
The urobiome of continent adult women: a cross-sectional study. BJOG : an international journal of obstetrics and gynaecology 127 (2) (2019)
Ekaterina V Filippova, Steven Weigand, Olga Kiryukhina, Alan J Wolfe, Wayne F Anderson
Analysis of crystalline and solution states of ligand-free spermidine N-acetyltransferase (SpeG) from Escherichia coli. Acta crystallographica. Section D, Structural biology 75 (Pt 6) (2019)
Linda I Hu, Ekaterina V Filippova, Joseph Dang, Sergii Pshenychnyi, Jiapeng Ruan, Olga Kiryukhina, Wayne F Anderson, Misty L Kuhn, Alan J Wolfe
The spermidine acetyltransferase SpeG regulates transcription of the small RNA rprA. PloS one 13 (12) (2018)
Robert Davis, Ana Écija-Conesa, Julia Gallego-Jara, Teresa de Diego, Ekaterina V Filippova, Gina Kuffel, Wayne F Anderson, Bradford W Gibson, Birgit Schilling, Manuel Cánovas, Alan J Wolfe
An acetylatable lysine controls CRP function in E. coli. Molecular microbiology 107 (1) (2017)