Samuel H Payne

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 36

Top Venues

Journal of proteome research

bioRxiv : the preprint server for biology

Analytical chemistry

mBio

Brigham Young University

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Brigham Young University Jul 01 2018

United States

Associate Professor of Bioinformatics :: Biology

Pacific Northwest National Laboratory

United States

Senior Informatics Scientist :: Biological Sciences

J Craig Venter Institute

United States

Principle Investigator :: Informatics

Publications

Connor Peterson, Hannah Boekweg, Eilenora Presley, Samuel H Payne
Pushing the Isotopic Envelope: When carrier channels pollute their neighbors' signals. bioRxiv : the preprint server for biology (2024)
Alyssa A Nitz, Ansima R Mongane, Luke Squires, Samuel H Payne
Attracting Computational Researchers to Proteomics. Journal of the American Society for Mass Spectrometry (2024)
Connor Peterson, Hannah Boekweg, Eilenora Presley, Samuel H Payne
Pushing the Isotopic Envelope: When carrier channels pollute their neighbors' signals. bioRxiv : the preprint server for biology (2024)
Hanna E Walukiewicz, Yuliya Farris, Meagan C Burnet, Sarah C Feid, Youngki You, Hyeyoon Kim, Thomas Bank, David G Christensen, Samuel H Payne, Alan J Wolfe, Christopher V Rao, Ernesto S Nakayasu
Regulation of bacterial stringent response by an evolutionarily conserved ribosomal protein L11 methylation. mBio (2024)
Alyssa A Nitz, Jose Humberto Giraldez Chavez, Zachary G Eliason, Samuel H Payne
Are We There Yet? Assessing the Readiness of Single-Cell Proteomics to Answer Biological Hypotheses. Journal of proteome research (2024)
Connor Peterson, Hannah Boekweg, Eilenora Presley, Samuel H Payne
Pushing the Isotopic Envelope: When carrier channels pollute their neighbors' signals. bioRxiv : the preprint server for biology (2024)
Yiran Liang, Thy Truong, Aubrianna J Saxton, Hannah Boekweg, Samuel H Payne, Pam M Van Ry, Ryan T Kelly
HyperSCP: Combining Isotopic and Isobaric Labeling for Higher Throughput Single-Cell Proteomics. Analytical chemistry (2023)
Amanda J Guise, Santosh A Misal, Richard Carson, Hannah Boekweg, Daisha Van Der Watt, Thy Truong, Yiran Liang, Jen-Hwa Chu, Nora C Welsh, Jake Gagnon, Samuel H Payne, Edward D Plowey, Ryan T Kelly
TDP-43-stratified single-cell proteomic profiling of postmortem human spinal motor neurons reveals protein dynamics in amyotrophic lateral sclerosis. bioRxiv : the preprint server for biology (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Yiran Liang, Thy Truong, Aubrianna J Saxton, Hannah Boekweg, Samuel H Payne, Pam M Van Ry, Ryan T Kelly
HyperSCP: Combining Isotopic and Isobaric Labeling for Higher Throughput Single-Cell Proteomics. Analytical chemistry (2023)
Yiran Liang, Thy Truong, Aubrianna J Saxton, Hannah Boekweg, Samuel H Payne, Pam M Van Ry, Ryan T Kelly
HyperSCP: Combining Isotopic and Isobaric Labeling for Higher Throughput Single-Cell Proteomics. Analytical chemistry 95 (20) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Milene C Vallejo, Soumyadeep Sarkar, Emily C Elliott, Hayden R Henry, Samantha M Powell, Ivo Diaz Ludovico, Youngki You, Fei Huang, Samuel H Payne, Sasanka Ramanadham, Emily K Sims, Thomas O Metz, Raghavendra G Mirmira, Ernesto S Nakayasu
A proteomic meta-analysis refinement of plasma extracellular vesicles. Scientific data 10 (1) (2023)
Benjamin A Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H Payne, Tobias Greisager Rehfeldt, Tobias K Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaino, Mathias Wilhelm, Magnus Palmblad
Toward an Integrated Machine Learning Model of a Proteomics Experiment. Journal of proteome research 22 (3) (2023)
Joon-Yong Lee, Hugh D Mitchell, Meagan C Burnet, Ruonan Wu, Sarah C Jenson, Eric D Merkley, Ernesto S Nakayasu, Carrie D Nicora, Janet K Jansson, Kristin E Burnum-Johnson, Samuel H Payne
Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics. Journal of proteome research 21 (8) (2022)
Mason D Taylor, Bryn Mendenhall, Calvin S Woods, Madeline E Rasband, Milene C Vallejo, Elizabeth G Bailey, Samuel H Payne
Online Tools for Teaching Cancer Bioinformatics. Journal of microbiology & biology education 22 (2) (2021)
Michael S Bradshaw, Samuel H Payne
Detecting fabrication in large-scale molecular omics data. PloS one 16 (11) (2021)
Kuan-Lin Huang, Adam D Scott, Daniel Cui Zhou, Liang-Bo Wang, Amila Weerasinghe, Abdulkadir Elmas, Ruiyang Liu, Yige Wu, Michael C Wendl, Matthew A Wyczalkowski, Jessika Baral, Sohini Sengupta, Chin-Wen Lai, Kelly Ruggles, Samuel H Payne, Benjamin Raphael, David Fenyo, Ken Chen, Gordon B Mills, Li Ding
Spatially interacting phosphorylation sites and mutations in cancer. Nature communications 12 (1) (2021)
Daniel Zamith-Miranda, Heino M Heyman, Meagan C Burnet, Sneha P Couvillion, Xueyun Zheng, Nathalie Munoz, William C Nelson, Jennifer E Kyle, Erika M Zink, Karl K Weitz, Kent J Bloodsworth, Geremy C Clair, Jeremy D Zucker, Jeremy R Teuton, Samuel H Payne, Young-Mo Kim, Morayma Reyes Gil, Erin S Baker, Erin L Bredeweg, Joshua D Nosanchuk, Ernesto S Nakayasu
A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets. mBio (2021)
Caleb M Lindgren, David W Adams, Benjamin Kimball, Hannah Boekweg, Sadie Tayler, Samuel L Pugh, Samuel H Payne
Simplified and Unified Access to Cancer Proteogenomic Data. Journal of proteome research 20 (4) (2021)
Hannah Boekweg, Daisha Van Der Watt, Thy Truong, S Madisyn Johnston, Amanda J Guise, Edward D Plowey, Ryan T Kelly, Samuel H Payne
Features of Peptide Fragmentation Spectra in Single-Cell Proteomics. Journal of proteome research 21 (1) (2021)
Aivett Bilbao, Bryson C Gibbons, Sarah M Stow, Jennifer E Kyle, Kent J Bloodsworth, Samuel H Payne, Richard D Smith, Helen S C Lazzarin, Erin S Baker, John C Fjeldsted
A Preprocessing Tool for Enhanced Ion Mobility-Mass Spectrometry-Based Omics Workflows. Journal of proteome research (2021)
Hannah Boekweg, Michaela A McCown, Samuel H Payne
Simple and Efficient Data Analysis Dissemination for Individual Laboratories. Journal of proteome research 19 (10) (2020)
Yiran Liang, Hayden Acor, Michaela A McCown, Andikan J Nwosu, Hannah Boekweg, Nathaniel B Axtell, Thy Truong, Yongzheng Cong, Samuel H Payne, Ryan T Kelly
Fully Automated Sample Processing and Analysis Workflow for Low-Input Proteome Profiling. Analytical chemistry 93 (3) (2020)
Bryson C Gibbons, Thomas L Fillmore, Yuqian Gao, Ronald J Moore, Tao Liu, Ernesto S Nakayasu, Thomas O Metz, Samuel H Payne
Rapidly Assessing the Quality of Targeted Proteomics Experiments through Monitoring Stable-Isotope Labeled Standards. Journal of proteome research 18 (2) (2018)
Matthew The, Fredrik Edfors, Yasset Perez Riverol, Samuel H Payne, Michael R Hoopmann, Magnus Palmblad, Björn Forsström, Lukas Käll
A Protein Standard That Emulates Homology for the Characterization of Protein Inference Algorithms. Journal of proteome research 17 (5) (2018)
Irena K Kushner, Geremy C Clair, Samuel Owen Purvine, Joon-Yong Lee, Joshua N Adkins, Samuel H Payne
Individual Variability of Protein Expression in Human Tissues. Journal of proteome research 17 (11) (2018)
Mona M Hosseini, Stephen E Kurtz, Sherif Abdelhamed, Shawn Mahmood, Monika A Davare, Andy Kaempf, Johannes Elferich, Jason E McDermott, Tao Liu, Samuel H Payne, Ujwal Shinde, Karin D Rodland, Motomi Mori, Brian J Druker, Jack W Singer, Anupriya Agarwal
Inhibition of interleukin-1 receptor-associated kinase-1 is a therapeutic strategy for acute myeloid leukemia subtypes. Leukemia 32 (11) (2018)
Joon-Yong Lee, Grant M Fujimoto, Ryan Wilson, H Steven Wiley, Samuel H Payne
Blazing Signature Filter: a library for fast pairwise similarity comparisons. BMC bioinformatics 19 (1) (2018)
Jungkap Park, Paul D Piehowski, Christopher Wilkins, Mowei Zhou, Joshua Mendoza, Grant M Fujimoto, Bryson C Gibbons, Jared B Shaw, Yufeng Shen, Anil K Shukla, Ronald J Moore, Tao Liu, Vladislav A Petyuk, Nikola Tolić, Ljiljana Paša-Tolić, Richard D Smith, Samuel H Payne, Sangtae Kim
Informed-Proteomics: open-source software package for top-down proteomics. Nature methods 14 (9) (2017)
Xueyun Zheng, Noor A Aly, Yuxuan Zhou, Kevin T Dupuis, Aivett Bilbao, Vanessa L Paurus, Daniel J Orton, Ryan Wilson, Samuel H Payne, Richard D Smith, Erin S Baker
A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry. Chemical science 8 (11) (2017)
Ying Sonia Ting, Jarrett D Egertson, James G Bollinger, Brian C Searle, Samuel H Payne, William Stafford Noble, Michael J MacCoss
PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data. Nature methods 14 (9) (2017)
Seungjin Na, Samuel H Payne, Nuno Bandeira
Multi-species Identification of Polymorphic Peptide Variants via Propagation in Spectral Networks. Molecular & cellular proteomics : MCP 15 (11) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Samuel H Payne