Alexander Mathis

ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 14

Top Venues

Nature methods

eLife

Nature communications

Science advances

École Polytechnique Fédérale de Lausanne

Ludwig-Maximilians-Universitat Munchen (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

École Polytechnique Fédérale de Lausanne Aug 01 2020

Switzerland

Tenure Track Assistant Professor :: Life Sciences

Harvard University

United States

Postdoc / Research Scientist

Education History

Ludwig-Maximilians-Universitat Munchen

Germany

PHD :: Department Biologie II, Graduate School for Systemic Neuroscience

Publications

Caleb Weinreb, Jonah E Pearl, Sherry Lin, Mohammed Abdal Monium Osman, Libby Zhang, Sidharth Annapragada, Eli Conlin, Red Hoffmann, Sofia Makowska, Winthrop F Gillis, Maya Jay, Shaokai Ye, Alexander Mathis, Mackenzie Weygandt Mathis, Talmo D Pereira, Scott W Linderman, Sandeep Robert Datta
Keypoint-MoSeq: parsing behavior by linking point tracking to pose dynamics. Nature methods 21 (7) (2024)
Shaokai Ye, Anastasiia Filippova, Jessy Lauer, Steffen Schneider, Maxime Vidal, Tian Qiu, Alexander Mathis, Mackenzie Weygandt Mathis
SuperAnimal pretrained pose estimation models for behavioral analysis. Nature communications 15 (1) (2024)
Caleb Weinreb, Jonah E Pearl, Sherry Lin, Mohammed Abdal Monium Osman, Libby Zhang, Sidharth Annapragada, Eli Conlin, Red Hoffmann, Sofia Makowska, Winthrop F Gillis, Maya Jay, Shaokai Ye, Alexander Mathis, Mackenzie Weygandt Mathis, Talmo D Pereira, Scott W Linderman, Sandeep Robert Datta
Keypoint-MoSeq: parsing behavior by linking point tracking to pose dynamics. Nature methods 21 (7) (2024)
Caleb Weinreb, Jonah E Pearl, Sherry Lin, Mohammed Abdal Monium Osman, Libby Zhang, Sidharth Annapragada, Eli Conlin, Red Hoffmann, Sofia Makowska, Winthrop F Gillis, Maya Jay, Shaokai Ye, Alexander Mathis, Mackenzie Weygandt Mathis, Talmo D Pereira, Scott W Linderman, Sandeep Robert Datta
Keypoint-MoSeq: parsing behavior by linking point tracking to pose dynamics. Nature methods 21 (7) (2024)
Shaokai Ye, Anastasiia Filippova, Jessy Lauer, Steffen Schneider, Maxime Vidal, Tian Qiu, Alexander Mathis, Mackenzie Weygandt Mathis
SuperAnimal pretrained pose estimation models for behavioral analysis. Nature communications 15 (1) (2024)
Caleb Weinreb, Jonah E Pearl, Sherry Lin, Mohammed Abdal Monium Osman, Libby Zhang, Sidharth Annapragada, Eli Conlin, Red Hoffmann, Sofia Makowska, Winthrop F Gillis, Maya Jay, Shaokai Ye, Alexander Mathis, Mackenzie Weygandt Mathis, Talmo D Pereira, Scott W Linderman, Sandeep Robert Datta
Keypoint-MoSeq: parsing behavior by linking point tracking to pose dynamics. Nature methods 21 (7) (2024)
Caleb Weinreb, Mohammed Abdal Monium Osman, Libby Zhang, Sherry Lin, Jonah E Pearl, Sidharth Annapragada, Eli Conlin, Winthrop F Gillis, Maya Jay, Shaokai Ye, Alexander Mathis, Mackenzie Weygandt Mathis, Talmo D Pereira, Scott W Linderman, Sandeep Robert Datta
Keypoint-MoSeq: parsing behavior by linking point tracking to pose dynamics. bioRxiv : the preprint server for biology (2023)
Kai J Sandbrink, Pranav Mamidanna, Claudio Michaelis, Matthias Bethge, Mackenzie Weygandt Mathis, Alexander Mathis
Contrasting action and posture coding with hierarchical deep neural network models of proprioception. eLife 12 (2023)
Devis Tuia, Benjamin Kellenberger, Sara Beery, Blair R Costelloe, Silvia Zuffi, Benjamin Risse, Alexander Mathis, Mackenzie Weygandt Mathis, Frank Van Langevelde, Tilo Burghardt, Roland Kays, Holger Klinck, Martin Wikelski, Iain D Couzin, Grant van Horn, Margaret C Crofoot, Charles V Stewart, Tanya Berger-Wolf
Perspectives in machine learning for wildlife conservation. Nature communications 13 (1) (2022)
Jessy Lauer, Mu Zhou, Shaokai Ye, William Menegas, Steffen Schneider, Tanmay Nath, Mohammed Mostafizur Rahman, Valentina Di Santo, Daniel Soberanes, Guoping Feng, Venkatesh N Murthy, George Lauder, Catherine Dulac, Mackenzie Weygandt Mathis, Alexander Mathis
Multi-animal pose estimation, identification and tracking with DeepLabCut. Nature methods 19 (4) (2022)
Amélie Cachot, Mariia Bilous, Yen-Cheng Liu, Xiaokang Li, Margaux Saillard, Mara Cenerenti, Georg Alexander Rockinger, Tania Wyss Lozano, Philippe Guillaume, Julien Schmidt, Raphaël Genolet, Giuseppe Ercolano, Maria Pia Protti, Walter Reith, Kalliopi Ioannidou, Laurence L de Leval, Joseph A Trapani, Sergio A Quezada, Alexandre Harari, Daniel E Speiser, Alexander Mathis, David Gfeller, Hatice Altug, Pedro Romero, Camilla Jandus
Tumor-specific cytolytic CD4 T cells mediate immunity against human cancer. Science advances 7 (9) (2021)
Maxime Vidal, Nathan Wolf, Beth Rosenberg, Bradley P Harris, Alexander Mathis
Perspectives on Individual Animal Identification from Biology and Computer Vision. Integrative and comparative biology 61 (3) (2021)
Gary A Kane, Gonçalo Lopes, Jonny L Saunders, Alexander Mathis, Mackenzie Weygandt Mathis
Real-time, low-latency closed-loop feedback using markerless posture tracking. eLife 9 (2020)
Alexander Mathis, Pranav Mamidanna, Kevin M Cury, Taiga Abe, Venkatesh N Murthy, Mackenzie Weygandt Mathis, Matthias Bethge
DeepLabCut: markerless pose estimation of user-defined body parts with deep learning. Nature neuroscience 21 (9) (2018)
Martin Stemmler, Alexander Mathis, Andreas V M Herz
Connecting multiple spatial scales to decode the population activity of grid cells. Science advances 1 (11) (2015)
Alexander Mathis, Martin B Stemmler, Andreas Vm Herz
Probable nature of higher-dimensional symmetries underlying mammalian grid-cell activity patterns. eLife 4 (2015)

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Publication Activity (10 Years)

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Alexander Mathis