Andreas Tj Rnberg (Andreas Tjärnberg)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 18

Top Venues

Genome biology

bioRxiv : the preprint server for biology

PLoS computational biology

NPJ systems biology and applications

New York University

Stockholms Universitet (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

New York University Sep 15 2018

United States

Postdoc Associate :: Biology

Linköpings universitet - Sep 14 2018

Sweden

Postdoc Researcher :: IFM

Education History

Stockholms Universitet

Sweden

PHD :: Biochemistry and Biophysics

Publications

Andreas Tj Rnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham, Richard Bonneau
Structure-primed embedding on the transcription factor manifold enables transparent model architectures for gene regulatory network and latent activity inference. Genome biology 25 (1) (2024)
Andreas Tj Rnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham, Richard Bonneau
Structure-primed embedding on the transcription factor manifold enables transparent model architectures for gene regulatory network and latent activity inference. Genome biology 25 (1) (2024)
Andreas Tj Rnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham, Richard Bonneau
Structure-primed embedding on the transcription factor manifold enables transparent model architectures for gene regulatory network and latent activity inference. Genome biology 25 (1) (2024)
Andreas Tj Rnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham, Richard Bonneau
Structure-primed embedding on the transcription factor manifold enables transparent model architectures for gene regulatory network and latent activity inference. Genome biology 25 (1) (2024)
Andreas Tj Rnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham, Richard Bonneau
Structure-primed embedding on the transcription factor manifold enables transparent model architectures for gene regulatory network and latent activity inference. Genome biology 25 (1) (2024)
Yelena Y Bernadskaya, Ariel Kuan, Andreas Tj Rnberg, Jonas Brandenburg, Ping Zheng, Keira A Wiechecki, Nicole Kaplan, Margaux Failla, Maria Bikou, Oliver Madilian, Wei Wang, Lionel A Christiaen
Cell cycle-driven transcriptome maturation confers multilineage competence to cardiopharyngeal progenitors. bioRxiv : the preprint server for biology (2024)
Andreas Tj Rnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham, Richard Bonneau
Structure-primed embedding on the transcription factor manifold enables transparent model architectures for gene regulatory network and latent activity inference. Genome biology 25 (1) (2024)
Andreas Tj Rnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham, Richard Bonneau
Structure-primed embedding on the transcription factor manifold enables transparent model architectures for gene regulatory network and latent activity inference. Genome biology 25 (1) (2024)
Yelena Y Bernadskaya, Ariel Kuan, Andreas Tj Rnberg, Jonas Brandenburg, Ping Zheng, Keira A Wiechecki, Nicole Kaplan, Margaux Failla, Maria Bikou, Oliver Madilian, Wei Wang, Lionel A Christiaen
Cell cycle-driven transcriptome maturation confers multilineage competence to cardiopharyngeal progenitors. bioRxiv : the preprint server for biology (2024)
Christopher A Jackson, Maggie Beheler-Amass, Andreas Tj Rnberg, Ina Suresh, Angela Shang-Mei Hickey, Richard A Bonneau, David Gresham
Simultaneous estimation of gene regulatory network structure and RNA kinetics from single cell gene expression. bioRxiv : the preprint server for biology (2023)
Andreas Tj Rnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham, Richard A Bonneau
Structure Primed Embedding on the Transcription Factor Manifold Enables Transparent Model Architectures for Gene Regulatory Network and Latent Activity Inference. bioRxiv : the preprint server for biology (2023)
Andreas Tj Rnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham, Richard A Bonneau
Structure Primed Embedding on the Transcription Factor Manifold Enables Transparent Model Architectures for Gene Regulatory Network and Latent Activity Inference. bioRxiv : the preprint server for biology (2023)
Andreas Tj Rnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham, Richard A Bonneau
Structure Primed Embedding on the Transcription Factor Manifold Enables Transparent Model Architectures for Gene Regulatory Network and Latent Activity Inference. bioRxiv : the preprint server for biology (2023)
Claudia Skok Gibbs, Christopher A Jackson, Giuseppe-Antonio Saldi, Andreas Tj Rnberg, Aashna Shah, Aaron Watters, Nicholas De Veaux, Konstantine Tchourine, Ren Yi, Tymor Hamamsy, Dayanne M Castro, Nicholas Carriero, Bram L Gorissen, David Gresham, Emily R Miraldi, Richard Bonneau
High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0. Bioinformatics (Oxford, England) 38 (9) (2022)
Andreas Tj Rnberg, Omar Mahmood, Christopher A Jackson, Giuseppe-Antonio Saldi, Kyunghyun Cho, Lionel A Christiaen, Richard A Bonneau
Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data. PLoS computational biology 17 (1) (2021)
Sanjiv K Dwivedi, Andreas Tj Rnberg, Jesper N Tegnér, Mika Gustafsson
Deriving disease modules from the compressed transcriptional space embedded in a deep autoencoder. Nature communications 11 (1) (2020)
Deniz Seçilmiş, Thomas Hillerton, Daniel C Morgan, Andreas Tj Rnberg, Sven Nelander, Torbjörn E M Nordling, Erik L L Sonnhammer
Uncovering cancer gene regulation by accurate regulatory network inference from uninformative data. NPJ systems biology and applications 6 (1) (2020)
Rasmus Magnusson, Guido Pio Mariotti, Mattias Köpsén, William Lövfors, Danuta R Gawel, Rebecka Jörnsten, Jörg Linde, Torbjörn E M Nordling, Elin Nyman, Sylvie Schulze, Colm E Nestor, Huan Zhang, Gunnar Cedersund, Mikael Benson, Andreas Tj Rnberg, Mika Gustafsson
LASSIM-A network inference toolbox for genome-wide mechanistic modeling. PLoS computational biology 13 (6) (2017)

Andreas Tj Rnberg.css-eqlu8i{font-size:small;padding-left:4px;} (Andreas Tjärnberg)

Publication Activity (10 Years)

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Andreas Tj Rnberg (Andreas Tjärnberg)