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David Gresham (D Gresham)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 28

Top Venues

bioRxiv : the preprint server for biology

Microbiology resource announcements

eLife

Molecular systems biology

New York University

Edith Cowan University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

New York University

United States

Associate Professor :: Biology

Education History

Edith Cowan University

Australia

PHD

Publications

Ying Xie, David Gresham, Liam J Holt
Increased mesoscale diffusivity in response to acute glucose starvation. bioRxiv : the preprint server for biology (2023)
Grace Avecilla, Pieter Spealman, Julia Matthews, Elodie Caudal, Joseph Schacherer, David Gresham
Copy number variation alters local and global mutational tolerance. Genome research (2023)
Christopher A Jackson, Maggie Beheler-Amass, Andreas Tj Rnberg, Ina Suresh, Angela Shang-Mei Hickey, Richard A Bonneau, David Gresham
Simultaneous estimation of gene regulatory network structure and RNA kinetics from single cell gene expression. bioRxiv : the preprint server for biology (2023)
Carolina Oliveira de Santana, Pieter Spealman, David Gresham, Gabriel G Perron
Metagenomes from Soils along an Agricultural Transect in Ulster County, New York. Microbiology resource announcements 12 (3) (2023)
Pieter Spealman, Carolina de Santana, Titir De, David Gresham
Post-transcriptional mechanisms modulate the consequences of adaptive copy number variation. bioRxiv : the preprint server for biology (2023)
Siyu Sun, Daniel Tranchina, David Gresham
Parallel proteomics and phosphoproteomics defines starvation signal specific processes in cell quiescence. bioRxiv : the preprint server for biology (2023)
Carolina Oliveira de Santana, Pieter Spealman, David Gresham, Gabriel G Perron
Metagenomes from Soils along an Agricultural Transect in Ulster County, New York. Microbiology resource announcements (2023)
Carolina Oliveira de Santana, Pieter Spealman, David Gresham, Gabriel G Perron
Metagenomes from Soils along an Agricultural Transect in Ulster County, New York. Microbiology resource announcements 12 (3) (2023)
Ying Xie, David Gresham, Liam J Holt
Increased mesoscale diffusivity in response to acute glucose starvation. bioRxiv : the preprint server for biology (2023)
A E Roder, Katherine E E Johnson, M Knoll, M Khalfan, B Wang, Stacey Schultz-Cherry, S Banakis, A Kreitman, C Mederos, J-H Youn, R Mercado, W Wang, M Chung, D Ruchnewitz, M I Samanovic, M J Mulligan, M Lässig, M Luksza, Sanchita Das, David Gresham, Elodie Ghedin
Optimized quantification of intra-host viral diversity in SARS-CoV-2 and influenza virus sequence data. mBio (2023)
Andreas Tj Rnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham, Richard A Bonneau
Structure Primed Embedding on the Transcription Factor Manifold Enables Transparent Model Architectures for Gene Regulatory Network and Latent Activity Inference. bioRxiv : the preprint server for biology (2023)
Pieter Spealman, Titir De, Julie N Chuong, David Gresham
Best Practices in Microbial Experimental Evolution: Using Reporters and Long-Read Sequencing to Identify Copy Number Variation in Experimental Evolution. Journal of molecular evolution (2023)
Ying Xie, David Gresham, Liam J Holt
Increased mesoscale diffusivity in response to acute glucose starvation. bioRxiv : the preprint server for biology (2023)
Marissa Knoll, Rebekah Honce, Victoria Meliopoulos, Stacey Schultz-Cherry, Elodie Ghedin, David Gresham
Host obesity impacts genetic variation in influenza A viral populations. bioRxiv : the preprint server for biology (2023)
Ying Xie, David Gresham, Liam J Holt
Increased mesoscale diffusivity in response to acute glucose starvation. bioRxiv : the preprint server for biology (2023)
Ying Xie, Tiewei Liu, David Gresham, Liam J Holt
mRNA condensation fluidizes the cytoplasm. bioRxiv : the preprint server for biology (2023)
Andreas Tj Rnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham, Richard A Bonneau
Structure Primed Embedding on the Transcription Factor Manifold Enables Transparent Model Architectures for Gene Regulatory Network and Latent Activity Inference. bioRxiv : the preprint server for biology (2023)
Andreas Tj Rnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham, Richard A Bonneau
Structure Primed Embedding on the Transcription Factor Manifold Enables Transparent Model Architectures for Gene Regulatory Network and Latent Activity Inference. bioRxiv : the preprint server for biology (2023)
Pieter Spealman, Grace Avecilla, Julia Matthews, Ina Suresh, David Gresham
Complex Genomic Rearrangements following Selection in a Glutamine-Limited Medium over Hundreds of Generations. Microbiology resource announcements 11 (11) (2022)
Grace Avecilla, Julie N Chuong, Fangfei Li, Gavin Sherlock, David Gresham, Yoav Ram
Neural networks enable efficient and accurate simulation-based inference of evolutionary parameters from adaptation dynamics. PLoS biology 20 (5) (2022)
Siyu Sun, Anastasia Baryshnikova, Nathan Brandt, David Gresham
Genetic interaction profiles of regulatory kinases differ between environmental conditions and cellular states. Molecular systems biology 16 (5) (2021)
Christopher A Jackson, David Gresham
A Bright IDEA. Molecular systems biology 16 (4) (2021)
Christopher A Jackson, Dayanne M Castro, Giuseppe-Antonio Saldi, Richard A Bonneau, David Gresham
Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments. eLife 9 (2020)
Stephanie Lauer, David Gresham
An evolving view of copy number variants. Current genetics 65 (6) (2019)
Darach Miller, Nathan Brandt, David Gresham
Systematic identification of factors mediating accelerated mRNA degradation in response to changes in environmental nitrogen. PLoS genetics 14 (5) (2018)
Jungeui Hong, Nathan Brandt, Farah Abdul-Rahman, Ally Yang, Tim Hughes, David Gresham
An incoherent feedforward loop facilitates adaptive tuning of gene expression. eLife 7 (2018)
Stephanie Lauer, Grace Avecilla, Pieter Spealman, Gunjan Sethia, Nathan Brandt, Sasha F Levy, David Gresham
Single-cell copy number variant detection reveals the dynamics and diversity of adaptation. PLoS biology 16 (12) (2018)
Naomi Ziv, Bentley M Shuster, Mark L Siegal, David Gresham
Resolving the Complex Genetic Basis of Phenotypic Variation and Variability of Cellular Growth. Genetics 206 (3) (2017)

David Gresham.css-eqlu8i{font-size:small;padding-left:4px;} (D Gresham)

Publication Activity (10 Years)

Top Topics

Top Venues

David Gresham (D Gresham)