Anne-Florence Bitbol

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 24

Top Venues

PLoS computational biology

Proceedings of the National Academy of Sciences of the United States of America

Journal of the Royal Society, Interface

eLife

CNRS

Université Paris Diderot (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

CNRS Feb 01 2016 - Jan 31 2020

France

CNRS Researcher :: Laboratoire Jean Perrin, CNRS - Sorbonne Université

Princeton University Sep 01 2012 - Jan 31 2016

United States

Postdoctoral Research Fellow :: Physics & Lewis-Sigler Institute for Integrative Genomics

Education History

Université Paris Diderot Sep 01 2009 - Aug 31 2012

France

PHD :: Physics

École Normale Supérieure Sep 01 2008 - Aug 31 2009

France

MSC :: Physics

École Normale Supérieure de Lyon Sep 01 2006 - Aug 31 2008

France

BSC :: Physics

Publications

Alia Abbara, Lisa Pagani, Celia García-Pareja, Anne-Florence Bitbol
Mutant fate in spatially structured populations on graphs: Connecting models to experiments. PLoS computational biology 20 (9) (2024)
Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol
Pairing interacting protein sequences using masked language modeling. Proceedings of the National Academy of Sciences of the United States of America 121 (27) (2024)
Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol
Pairing interacting protein sequences using masked language modeling. Proceedings of the National Academy of Sciences of the United States of America 121 (27) (2024)
Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol
Pairing interacting protein sequences using masked language modeling. Proceedings of the National Academy of Sciences of the United States of America 121 (27) (2024)
Nicola Dietler, Umberto Lupo, Anne-Florence Bitbol
Impact of phylogeny on structural contact inference from protein sequence data. Journal of the Royal Society, Interface 20 (199) (2023)
Damiano Sgarbossa, Umberto Lupo, Anne-Florence Bitbol
Generative power of a protein language model trained on multiple sequence alignments. eLife 12 (2023)
Richard Servajean, Anne-Florence Bitbol
Impact of population size on early adaptation in rugged fitness landscapes. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 378 (1877) (2023)
Nicola Dietler, Umberto Lupo, Anne-Florence Bitbol
Impact of phylogeny on structural contact inference from protein sequence data. Journal of the Royal Society, Interface 20 (199) (2023)
Damiano Sgarbossa, Umberto Lupo, Anne-Florence Bitbol
Generative power of a protein language model trained on multiple sequence alignments. eLife 12 (2023)
Nicola Dietler, Umberto Lupo, Anne-Florence Bitbol
Impact of phylogeny on structural contact inference from protein sequence data. Journal of the Royal Society, Interface 20 (199) (2023)
Alia Abbara, Anne-Florence Bitbol
Frequent asymmetric migrations suppress natural selection in spatially structured populations. PNAS nexus 2 (11) (2023)
Damiano Sgarbossa, Umberto Lupo, Anne-Florence Bitbol
Generative power of a protein language model trained on multiple sequence alignments. eLife 12 (2023)
Nicola Dietler, Umberto Lupo, Anne-Florence Bitbol
Impact of phylogeny on structural contact inference from protein sequence data. Journal of the Royal Society, Interface 20 (199) (2023)
Carlos A Gandarilla-Pérez, Sergio Pinilla, Anne-Florence Bitbol, Martin Weigt
Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins. PLoS computational biology 19 (3) (2023)
Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol
Protein language models trained on multiple sequence alignments learn phylogenetic relationships. Nature communications 13 (1) (2022)
Andonis Gerardos, Nicola Dietler, Anne-Florence Bitbol
Correlations from structure and phylogeny combine constructively in the inference of protein partners from sequences. PLoS computational biology 18 (5) (2022)
Darka Labavić, Claude Loverdo, Anne-Florence Bitbol
Hydrodynamic flow and concentration gradients in the gut enhance neutral bacterial diversity. Proceedings of the National Academy of Sciences of the United States of America 119 (1) (2022)
Loïc Marrec, Anne-Florence Bitbol
Adapt or Perish: Evolutionary Rescue in a Gradually Deteriorating Environment. Genetics 216 (2) (2020)
Loïc Marrec, Anne-Florence Bitbol
Resist or perish: Fate of a microbial population subjected to a periodic presence of antimicrobial. PLoS computational biology 16 (4) (2020)
Nicola Dietler, Matthias Minder, Vojislav Gligorovski, Augoustina Maria Economou, Denis Alain Henri Lucien Joly, Ahmad Sadeghi, Chun Hei Michael Chan, Mateusz Koziński, Martin Weigert, Anne-Florence Bitbol, Sahand Jamal Rahi
A convolutional neural network segments yeast microscopy images with high accuracy. Nature communications 11 (1) (2020)
Florence Bansept, Loïc Marrec, Anne-Florence Bitbol, Claude Loverdo
Antibody-mediated crosslinking of gut bacteria hinders the spread of antibiotic resistance. Evolution; international journal of organic evolution 73 (6) (2019)
Shou-Wen Wang, Anne-Florence Bitbol, Ned S Wingreen
Revealing evolutionary constraints on proteins through sequence analysis. PLoS computational biology 15 (4) (2019)
Guillaume Marmier, Martin Weigt, Anne-Florence Bitbol
Phylogenetic correlations can suffice to infer protein partners from sequences. PLoS computational biology 15 (10) (2019)
Anne-Florence Bitbol
Inferring interaction partners from protein sequences using mutual information. PLoS computational biology 14 (11) (2018)

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Publication Activity (10 Years)

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Anne-Florence Bitbol