Ned S Wingreen

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 50

Top Topics

Escherichia Coli

Molecular Dynamics Simulations

Top Venues

bioRxiv : the preprint server for biology

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Matthew E Black, Chenyi Fei, Ricard Alert, Ned S Wingreen, Joshua W Shaevitz
Capillary interactions drive the self-organization of bacterial colonies. bioRxiv : the preprint server for biology (2024)
Grace E Johnson, Chenyi Fei, Ned S Wingreen, Bonnie L Bassler
Single-cell gene-expression measurements in Vibrio cholerae biofilms reveal spatiotemporal patterns underlying development. bioRxiv : the preprint server for biology (2024)
Ushnish Rana, Ned S Wingreen, Clifford P Brangwynne, Athanassios Z Panagiotopoulos
Interfacial exchange dynamics of biomolecular condensates are highly sensitive to client interactions. The Journal of chemical physics 160 (14) (2024)
Grace E Johnson, Chenyi Fei, Ned S Wingreen, Bonnie L Bassler
Single-cell gene-expression measurements in Vibrio cholerae biofilms reveal spatiotemporal patterns underlying development. bioRxiv : the preprint server for biology (2024)
Sebastian Gonzalez La Corte, Corey A Stevens, Gerardo Cárcamo-Oyarce, Katharina Ribbeck, Ned S Wingreen, Sujit Sankar Datta
Morphogenesis of bacterial colonies in polymeric environments. bioRxiv : the preprint server for biology (2024)
Meera Gupta, Alex N T Johnson, Edward R Cruz, Eli J Costa, Randi L Guest, Sophia Hsin-Jung Li, Elizabeth M Hart, Thao Nguyen, Michael Stadlmeier, Benjamin P Bratton, Thomas J Silhavy, Ned S Wingreen, Zemer Gitai, Martin Wühr
Global protein turnover quantification in Escherichia coli reveals cytoplasmic recycling under nitrogen limitation. Nature communications 15 (1) (2024)
Dee M Ruttenberg, Simon A Levin, Ned S Wingreen, Sarah D Kocher
Variation in season length and development time is sufficient to drive the emergence and coexistence of social and solitary behavioral strategies. bioRxiv : the preprint server for biology (2024)
Grace E Johnson, Chenyi Fei, Ned S Wingreen, Bonnie L Bassler
Single-cell gene-expression measurements in Vibrio cholerae biofilms reveal spatiotemporal patterns underlying development. bioRxiv : the preprint server for biology (2024)
Ushnish Rana, Ned S Wingreen, Clifford P Brangwynne, Athanassios Z Panagiotopoulos
Interfacial exchange dynamics of biomolecular condensates are highly sensitive to client interactions. The Journal of chemical physics 160 (14) (2024)
Meera Gupta, Alex N T Johnson, Edward R Cruz, Eli J Costa, Randi L Guest, Sophia Hsin-Jung Li, Elizabeth M Hart, Thao Nguyen, Michael Stadlmeier, Benjamin P Bratton, Thomas J Silhavy, Ned S Wingreen, Zemer Gitai, Martin Wühr
Global protein turnover quantification in Escherichia coli reveals cytoplasmic recycling under nitrogen limitation. Nature communications 15 (1) (2024)
Meera Gupta, Alex N T Johnson, Edward R Cruz, Eli J Costa, Randi L Guest, Sophia Hsin-Jung Li, Elizabeth M Hart, Thao Nguyen, Michael Stadlmeier, Benjamin P Bratton, Thomas J Silhavy, Ned S Wingreen, Zemer Gitai, Martin Wühr
Global protein turnover quantification in Escherichia coli reveals cytoplasmic recycling under nitrogen limitation. Nature communications 15 (1) (2024)
Ushnish Rana, Ned S Wingreen, Clifford P Brangwynne, Athanassios Z Panagiotopoulos
Interfacial exchange dynamics of biomolecular condensates are highly sensitive to client interactions. The Journal of chemical physics 160 (14) (2024)
Dee M Ruttenberg, Simon A Levin, Ned S Wingreen, Sarah D Kocher
Variation in season length and development time is sufficient to drive the emergence and coexistence of social and solitary behavioral strategies. bioRxiv : the preprint server for biology (2024)
Ushnish Rana, Ned S Wingreen, Clifford P Brangwynne, Athanassios Z Panagiotopoulos
Interfacial exchange dynamics of biomolecular condensates are highly sensitive to client interactions. The Journal of chemical physics 160 (14) (2024)
Guanhua He, Trevor GrandPre, Hugh Wilson, Yaojun Zhang, Martin C Jonikas, Ned S Wingreen, Quan Wang
Phase-separating pyrenoid proteins form complexes in the dilute phase. Communications biology 6 (1) (2023)
Alejandro Martínez-Calvo, Carolina Trenado-Yuste, Hyunseok Lee, Jeff Gore, Ned S Wingreen, Sujit Sankar Datta
Interfacial morphodynamics of proliferating microbial communities. bioRxiv : the preprint server for biology (2023)
Bruce Wang, Aaron E Lin, Jiayi Yuan, Katherine E Novak, Matthias D Koch, Ned S Wingreen, Britt Adamson, Zemer Gitai
Single-cell massively-parallel multiplexed microbial sequencing (M3-seq) identifies rare bacterial populations and profiles phage infection. Nature microbiology (2023)
Guanhua He, Trevor GrandPre, Hugh Wilson, Yaojun Zhang, Martin C Jonikas, Ned S Wingreen, Quan Wang
Phase-separating pyrenoid proteins form complexes in the dilute phase. Communications biology 6 (1) (2023)
Guanhua He, Trevor GrandPre, Hugh Wilson, Yaojun Zhang, Martin C Jonikas, Ned S Wingreen, Quan Wang
Phase-separating pyrenoid proteins form complexes in the dilute phase. Communications biology 6 (1) (2023)
Andrew G T Pyo, Yaojun Zhang, Ned S Wingreen
Proximity to criticality predicts surface properties of biomolecular condensates. Proceedings of the National Academy of Sciences of the United States of America 120 (23) (2023)
Trevor GrandPre, Yaojun Zhang, Andrew G T Pyo, Benjamin Weiner, Je-Luen Li, Martin C Jonikas, Ned S Wingreen
Effects of linker length on phase separation: lessons from the Rubisco-EPYC1 system of the algal pyrenoid. bioRxiv : the preprint server for biology (2023)
Guanhua He, Trevor GrandPre, Hugh Wilson, Yaojun Zhang, Martin C Jonikas, Ned S Wingreen, Quan Wang
Phase-separating pyrenoid proteins form complexes in the dilute phase. Communications biology 6 (1) (2023)
Alejandro Martínez-Calvo, Ned S Wingreen, Sujit Sankar Datta
Pattern formation by bacteria-phage interactions. bioRxiv : the preprint server for biology (2023)
Guanhua He, Trevor GrandPre, Hugh Wilson, Yaojun Zhang, Martin C Jonikas, Ned S Wingreen, Quan Wang
Phase-separating pyrenoid proteins form complexes in the dilute phase. Communications biology 6 (1) (2023)
Oskar Hallatschek, Sujit S Datta, Knut Drescher, Jörn Dunkel, Jens Elgeti, Bartek Waclaw, Ned S Wingreen
Proliferating active matter. Nature reviews. Physics (2023)
Daniel S W Lee, Chang-Hyun Choi, David W Sanders, Lien Beckers, Joshua A Riback, Clifford P Brangwynne, Ned S Wingreen
Size distributions of intracellular condensates reflect competition between coalescence and nucleation. Nature physics 19 (4) (2023)
Oskar Hallatschek, Sujit S Datta, Knut Drescher, Jörn Dunkel, Jens Elgeti, Bartek Waclaw, Ned S Wingreen
Proliferating active matter. Nature reviews. Physics (2023)
Chenyi Fei, Alexandra T Wilson, Niall M Mangan, Ned S Wingreen, Martin C Jonikas
Modelling the pyrenoid-based CO 2 -concentrating mechanism provides insights into its operating principles and a roadmap for its engineering into crops. Nature plants 8 (5) (2022)
Andrew A Bridges, Jojo A Prentice, Chenyi Fei, Ned S Wingreen, Bonnie L Bassler
Quantitative input-output dynamics of a c-di-GMP signal transduction cascade in Vibrio cholerae. PLoS biology 20 (3) (2022)
Courtney K Ellison, Chenyi Fei, Triana N Dalia, Ned S Wingreen, Ankur B Dalia, Joshua W Shaevitz, Zemer Gitai
Subcellular localization of type IV pili regulates bacterial multicellular development. Nature communications 13 (1) (2022)
Jaime G Lopez, Ned S Wingreen
Noisy metabolism can promote microbial cross-feeding. eLife 11 (2022)
Di Zhang, Sophia Hsin-Jung Li, Christopher G King, Ned S Wingreen, Zemer Gitai, Zhiyuan Li
Global and gene-specific translational regulation in Escherichia coli across different conditions. PLoS computational biology 18 (10) (2022)
Alejandro Martínez-Calvo, Tapomoy Bhattacharjee, R Ko Nane Bay, Hao Nghi Luu, Anna M Hancock, Ned S Wingreen, Sujit Sankar Datta
Morphological instability and roughening of growing 3D bacterial colonies. Proceedings of the National Academy of Sciences of the United States of America 119 (43) (2022)
Ane Landajuela, Martha Braun, Christopher D A Rodrigues, Alejandro Martínez-Calvo, Thierry Doan, Florian Horenkamp, Anna Andronicos, Vladimir Shteyn, Nathan D Williams, Chenxiang Lin, Ned S Wingreen, David Z Rudner, Erdem Karatekin
FisB relies on homo-oligomerization and lipid binding to catalyze membrane fission in bacteria. PLoS biology 19 (6) (2021)
Boyang Qin, Chenyi Fei, Bruce Wang, Howard A Stone, Ned S Wingreen, Bonnie L Bassler
Hierarchical transitions and fractal wrinkling drive bacterial pellicle morphogenesis. Proceedings of the National Academy of Sciences of the United States of America 118 (20) (2021)
Yaojun Zhang, Bin Xu, Benjamin G Weiner, Yigal Meir, Ned S Wingreen
Decoding the physical principles of two-component biomolecular phase separation. eLife 10 (2021)
Matthias D Koch, Chenyi Fei, Ned S Wingreen, Joshua W Shaevitz, Zemer Gitai
Competitive binding of independent extension and retraction motors explains the quantitative dynamics of type IV pili. Proceedings of the National Academy of Sciences of the United States of America 118 (8) (2021)
A Movilla Miangolarra, Sophia Hsin-Jung Li, Jean-François Joanny, Ned S Wingreen, Michele Castellana
Steric interactions and out-of-equilibrium processes control the internal organization of bacteria. Proceedings of the National Academy of Sciences of the United States of America 118 (43) (2021)
Avaneesh V Narla, David Bruce Borenstein, Ned S Wingreen
A biophysical limit for quorum sensing in biofilms. Proceedings of the National Academy of Sciences of the United States of America 118 (21) (2021)
Jaime G Lopez, Mohamed S Donia, Ned S Wingreen
Modeling the ecology of parasitic plasmids. The ISME journal 15 (10) (2021)
Benjamin G Weiner, Andrew G T Pyo, Yigal Meir, Ned S Wingreen
Motif-pattern dependence of biomolecular phase separation driven by specific interactions. PLoS computational biology 17 (12) (2021)
Boyang Qin, Chenyi Fei, Andrew A Bridges, Ameya A Mashruwala, Howard A Stone, Ned S Wingreen, Bonnie L Bassler
Cell position fates and collective fountain flow in bacterial biofilms revealed by light-sheet microscopy. Science (New York, N.Y.) 369 (6499) (2020)
Bin Xu, Guanhua He, Benjamin G Weiner, Pierre Ronceray, Yigal Meir, Martin C Jonikas, Ned S Wingreen
Rigidity enhances a magic-number effect in polymer phase separation. Nature communications 11 (1) (2020)
Chadi M Saad-Roy, Nimalan Arinaminpathy, Ned S Wingreen, Simon A Levin, Joshua M Akey, Bryan T Grenfell
Implications of localized charge for human influenza A H1N1 hemagglutinin evolution: Insights from deep mutational scans. PLoS computational biology 16 (6) (2020)
Amir Erez, Jaime G Lopez, Benjamin G Weiner, Yigal Meir, Ned S Wingreen
Nutrient levels and trade-offs control diversity in a serial dilution ecosystem. eLife 9 (2020)
Jing Yan, Chenyi Fei, Sheng Mao, Alexis Moreau, Ned S Wingreen, Andrej Košmrlj, Howard A Stone, Bonnie L Bassler
Mechanical instability and interfacial energy drive biofilm morphogenesis. eLife 8 (2019)
Shou-Wen Wang, Anne-Florence Bitbol, Ned S Wingreen
Revealing evolutionary constraints on proteins through sequence analysis. PLoS computational biology 15 (4) (2019)
Matthew Jemielita, Ned S Wingreen, Bonnie L Bassler
Quorum sensing controls Vibrio cholerae multicellular aggregate formation. eLife 7 (2018)
Thibaud O Taillefumier, Anna Posfai, Yigal Meir, Ned S Wingreen
Microbial consortia at steady supply. eLife 6 (2017)
Anja Paulick, Vladimir Jakovljevic, SiMing Zhang, Michael Erickstad, Alex Groisman, Yigal Meir, William S Ryu, Ned S Wingreen, Victor Sourjik
Mechanism of bidirectional thermotaxis in Escherichia coli. eLife 6 (2017)